PXD033720
PXD033720 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Bongolan_DecellKidney_P124_Lumos |
| Description | This dataset consists of 4 raw MS files and associated peak lists and results files, acquired on Thermo Fusion Lumos mass spectrometer operated in Data Dependent Acquisition mode. Samples were generated by Tonya Bongolan. SCX clean-up and mass spectrometry acquisition was performed by Cassandra Wong. Data analysis was performed by Brett Larsen. The files are associated with a manuscript submitted for publication by Tonya Bongolan et al. The main goal of this paper was to demonstrate the use of submicellar concentrations of SDS in kidney decellularization to maintain integrity of the acellular extracellular matrix (ECM). Ian M. Rogers is the corresponding author of the manuscript (rogers@lunenfeld.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca) This submission is associated with 2 Supplementary Files (in addition to this README file) Table 1 describes the composition of this dataset Table 2 lists all the peptide identification evidence (as per iProphet) |
| HostingRepository | MassIVE |
| AnnounceDate | 2022-05-05 |
| AnnouncementXML | Submission_2022-05-05_10:53:10.398.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Gingras Lab |
| SpeciesList | scientific name: Sus scrofa; common name: pig; NCBI TaxID: 9823; |
| ModificationList | deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide; CarbamidomethylDTT |
| Instrument | Orbitrap Fusion Lumos |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2022-05-05 10:00:04 | ID requested | |
| ⏵ 1 | 2022-05-05 10:53:10 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: Decellularization, Kidney, ECM, SDS |
Contact List
| Anne-Claude Gingras | |
|---|---|
| contact affiliation | LTRI |
| contact email | gingras@lunenfeld.ca |
| lab head | |
| Gingras Lab | |
| contact affiliation | Samuel Lunenfeld Research Institute |
| contact email | gingras@mshri.on.ca |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000089423/ |
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