PXD033600

PXD033600 is an original dataset announced via ProteomeXchange.

Title	Exploring the conversion of different Xylans by the marine Bacteroidetes Flavimarina sp. Hel_I_48
Description	Bacteroidetes have multiple polysaccharide utilization loci (PUL) which are specific for the decomposition of polysaccharides. The marine Bacteroidetes strain Flavimarina sp. Hel_I_48 encodes two separate PULs which target xylose-containing polysaccharides. We elucidated the specificity of these two PULs by correlating proteome data with biochemical activities of the encoded carbohydrate active enzymes. Proteomics revealed that one PUL targets glucuronoxylans whereas the other PUL targets arabinoxylans.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_06:54:26.061.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Irena Beidler
SpeciesList	scientific name: Flavimarina sp. Hel_I_48; NCBI TaxID: 1392488;
ModificationList	monohydroxylated residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2022-05-04 09:17:55	ID requested
1	2023-06-27 02:23:07	announced
⏵ 2	2023-11-14 06:54:26	announced	2023-11-14: Updated project metadata.

Dataset with its publication pending

submitter keyword: Marine Bacteria, Xylan,Flavimarina, Marine Polysaccharides, Algal Blooms, Bacteroidetes

Uwe T. Bornscheuer
contact affiliation	University of Greifswald, Institute of Biochemistry, Department of Biotechnology and Enzyme Catalysis
contact email	uwe.bornscheuer@uni-greifswald.de
lab head
Irena Beidler
contact affiliation	University of Greifswald, Department Pharmaceutical Biotechnology
contact email	irena.beidler@uni-greifswald.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD033600

PRIDE project URI

• PRIDE
  1. PXD033600
     1. Label: PRIDE project
     2. Name: Exploring the conversion of different Xylans by the marine Bacteroidetes Flavimarina sp. Hel_I_48