PXD033343

PXD033343 is an original dataset announced via ProteomeXchange.

Title	Study on the proteomic response of 5mm sections of root tips to water-deficit stress in two contrasting genotypes of rice
Description	In this study, we analysed the proteomic response of 5mm sections of root tips to water-deficit stress in two contrasting genotypes of rice: IR64, a lowland, drought-susceptible, and shallow-rooting genotype; and Azucena, an upland, drought-tolerant, and deep-rooting genotype. Using a Partial Least Square Discriminant Analysis, we identified statistically significant differentially abundant proteins across genotypes and conditions. Analysis of biological processes led to the identification of novel proteins involved in root elongation with specific expression patterns in Azucena.
HostingRepository	PRIDE
AnnounceDate	2022-08-11
AnnouncementXML	Submission_2022-08-11_03:28:07.573.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Fatemeh Habibpourmehraban
SpeciesList	scientific name: Oryza sativa (Rice); NCBI TaxID: 4530;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2022-04-21 06:47:49	ID requested
⏵ 1	2022-08-11 03:28:08	announced

Abdirad S, Wu Y, Ghorbanzadeh Z, Tazangi SE, Amirkhani A, Fitzhenry MJ, Kazemi M, Ghaffari MR, Koobaz P, Zeinalabedini M, Habibpourmehraban F, Masoomi-Aladizgeh F, Atwell BJ, Mirzaei M, Salekdeh GH, Haynes PA, meristematic root zone in contrasting genotypes reveals new insights in drought tolerance in rice. Proteomics, 22(21):e2200100(2022) [pubmed]

submitter keyword: Rice, Root, Drought, Proteome, TMT

Paul Haynes
contact affiliation	Professor at School of Natural Sciences in Macquarie University
contact email	paul.haynes@mq.edu.au
lab head
Fatemeh Habibpourmehraban
contact affiliation	Macquarie university
contact email	fatemeh.habibpour-mehraban@students.mq.edu.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD033343

PRIDE project URI

• PRIDE
  1. PXD033343
     1. Label: PRIDE project
     2. Name: Study on the proteomic response of 5mm sections of root tips to water-deficit stress in two contrasting genotypes of rice