PXD033033

PXD033033 is an original dataset announced via ProteomeXchange.

Title	Targeted proteomics of diel cycle of copepod Pleuromamma xiphias
Description	The diel vertically migrating copepod, Pleuromamma xiphias, migrates approximately 600 m daily, up and down in the water column. At the surface, the copepods feed on plankton at night, and then descend to the depths during the day, likely to escape visual predators. Both the migratory behavior and the physiological pathways that are up- and down-regulated throughout the migration are likely under at least partial circadian clock control. This experiment compares the protein abundances of select physiological processes from copepods collected in situ with copepods incubated in the dark to remove the influence of exogenous stimuli on physiology.
HostingRepository	PanoramaPublic
AnnounceDate	2024-05-02
AnnouncementXML	Submission_2024-05-02_12:56:00.135.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Emma Timmins-Schiffman
SpeciesList	scientific name: Pleuromamma xiphias; NCBI TaxID: 503034;
ModificationList	Carbamidomethyl; Label:13C(6)15N(2); Label:13C(6)15N(4)
Instrument	TSQ Altis

Revision	Datetime	Status	ChangeLog Entry
0	2022-04-06 20:04:32	ID requested
⏵ 1	2024-05-02 12:56:00	announced

Timmins-Schiffman E, Maas AE, Khanna R, Blanco-Bercial L, Huang E, Nunn BL. Removal of Exogenous Stimuli Reveals a Canalization of Circadian Physiology in a Vertically Migrating Copepod. Journal of Proteome Research, doi: 10.1021/acs.jproteome.4c00086

submitter keyword: copepod, selected reaction monitoring, diel vertical migration, circadian rhythm

Brook L. Nunn
contact affiliation	University of Washington
contact email	brookh@uw.edu
lab head
Emma Timmins-Schiffman
contact affiliation	University of Washington
contact email	emmats@uw.edu
dataset submitter

Panorama Public dataset URI