PXD032724
PXD032724 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Nickel Binding- and Histidine-Rich Proteins of Helicobacter species |
| Description | The files in this archive examine six species within the genus Helicobacter to assay their histidine-rich proteins. They correspond to the manuscript "Expansion of nickel binding- and histidine-rich proteins during gastric adaptation of Helicobacter species" by Frederic Fischer, Egor Vorontsov, Evelyne Turlin, Christian Malosse, Camille Garcia, David L. Tabb, Julia Chamot-Rooke, Riccardo Percudani, Daniel Vinella and Hilde De Reuse. The sequence databases for the Helicobacter species are based on reference or complete UniProt proteomes in FASTA format, supplemented with reannotations of Hpn and Hpn2 protein products. The full list of RAW files, including their attribution to individual species and the type of experiment they represent, can be found in RAWs-Readme. We have included QuaMeter IDFree metrics to include basic statistics such as length of LC gradient, the number of MS/MS scans, etc. |
| HostingRepository | MassIVE |
| AnnounceDate | 2022-07-05 |
| AnnouncementXML | Submission_2022-07-05_10:51:37.397.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | David L. Tabb |
| SpeciesList | scientific name: Helicobacter pylori; NCBI TaxID: 210; scientific name: Helicobacter acinonychis; NCBI TaxID: 212; scientific name: Helicobacter mustelae; NCBI TaxID: 217; scientific name: Helicobacter felis; NCBI TaxID: 214; scientific name: Helicobacter hepaticus; NCBI TaxID: 32025; scientific name: Helicobacter bizzozeronii; NCBI TaxID: 56877; |
| ModificationList | L-cystine (cross-link) |
| Instrument | Orbitrap Fusion |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2022-03-23 06:56:47 | ID requested | |
| ⏵ 1 | 2022-07-05 10:51:37 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: gastric, IMAC, nickel, reannotation |
Contact List
| Hilde De Reuse | |
|---|---|
| contact affiliation | Institut Pasteur |
| contact email | hilde.de-reuse@pasteur.fr |
| lab head | |
| David L. Tabb | |
| contact affiliation | Stellenbosch University |
| contact email | dtabb@sun.ac.za |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000089106/ |
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