PXD032272 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | An integrative transcriptomic and proteomic analysis of an industrial clavulanic acid-overproducing Streptomyces clavuligerus |
Description | Clavulanic acid is a clinically-important secondary metabolite used in treatment of infectious diseases. We aimed to decipher complex regulatory mechanisms acting in clavulanic acid biosynthesis through the analysis of transcriptome- and proteome-wide alterations in an industrial clavulanic acid overproducer Streptomyces clavuligerus, namely DEPA and its wild-type counterpart NRRL3585. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_07:27:35.017.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Servet ÖZCAN |
SpeciesList | scientific name: Streptomyces clavuligerus; NCBI TaxID: 1901; |
ModificationList | iodoacetamide derivatized residue |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-03-14 09:54:31 | ID requested | |
1 | 2022-11-02 10:15:52 | announced | |
⏵ 2 | 2023-11-14 07:27:39 | announced | 2023-11-14: Updated project metadata. |
Publication List
Kurt-K, ı, z, ı, ldo, ğ, an A, Ç, elik G, Ü, nsald, ı E, Ö, zcan S, Ayaz-G, ü, ner Ş, Ö, zcengiz G, An integrative-omics analysis of an industrial clavulanic acid-overproducing Streptomyces clavuligerus. Appl Microbiol Biotechnol, 106(18):6139-6156(2022) [pubmed] |
Keyword List
submitter keyword: Streptomyces clavuligerus DEPA, RNA seq, nanoLC-MS/MS, clavulanic acid overproduction |
Contact List
Servet Ozcan |
contact affiliation | Erciyes University Gene and Stem Cell Research Center |
contact email | ozcan@erciyes.edu.tr |
lab head | |
Servet ÖZCAN |
contact affiliation | Erciyes University Genkök |
contact email | ozcan@erciyes.edu.tr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD032272 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD032272
- Label: PRIDE project
- Name: An integrative transcriptomic and proteomic analysis of an industrial clavulanic acid-overproducing Streptomyces clavuligerus