PXD032201

PXD032201 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Human hepatocellular carcinoma MHCC97H proteome
Description	In this work, we generated a MHCC97H proteome datasets by In-gel digestion on Orbitrap Fusion Lumos. We systematically compared RNC-seq and Ribo-seq in the context of proteome identification, especially when identifying protein isoforms from AS. We also demonstrated that the single-molecule long read sequencing technique identified thousands of new splice variants and guided the MS identifications of new protein isoforms.
HostingRepository	PRIDE
AnnounceDate	2022-06-28
AnnouncementXML	Submission_2022-06-28_08:16:06.815.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	wang hongwei
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-03-11 09:15:34	ID requested
⏵ 1	2022-06-28 08:16:07	announced

Publication List

Wu C, Lu X, Lu S, Wang H, Li D, Zhao J, Jin J, Sun Z, He QY, Chen Y, Zhang G, Efficient Detection of the Alternative Spliced Human Proteome Using Translatome Sequencing. Front Mol Biosci, 9():895746(2022) [pubmed]

Wu C, Lu X, Lu S, Wang H, Li D, Zhao J, Jin J, Sun Z, He QY, Chen Y, Zhang G, Efficient Detection of the Alternative Spliced Human Proteome Using Translatome Sequencing. Front Mol Biosci, 9():895746(2022) [pubmed]

Keyword List

submitter keyword: Human, liver, MHCC97H, LC-MS/MS, In-gel digestion

submitter keyword: Human, liver, MHCC97H, LC-MS/MS, In-gel digestion

Contact List

Gong Zhang
contact affiliation	Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University , Guangzhou 510632, China.
contact email	zhanggong-uni@qq.com
lab head
wang hongwei
contact affiliation	JiNan University
contact email	912082819@qq.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/06/PXD032201
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/06/PXD032201

PRIDE project URI

Repository Record List

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