PXD032060
PXD032060 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Optimization of Elution Conditions for Biotinylated Peptides from Tamavidin 2-REV |
Description | We attempted to optimize the conditions for competitive elution of biotinylated peptides from the Tamavidin 2-REV beads. First, to optimize the temperature at which biotinylated peptides were eluted from the beads, biotinylated peptides were eluted with the biotin solution at 4, 37, 56, and 95 ºC. Second, we investigated whether the contamination of non-biotinylated peptides in the eluates could be reduced by adding a step of ‘mock’ elution with biotin-free buffer immediately before elution with the biotin solution. After the beads were incubated with a biotin-free buffer for 15 min at 37 ºC, the buffer was removed, and biotinylated peptides were eluted from the beads with the biotin solution at 37 ºC. Third, we compared biotin solutions containing various concentrations of NaCl (150, 250, 500, 1000, 2000 and 4000 mM). Finally, biotinylated peptides enriched by the original and optimized workflows from 300 µg proteins of RAW264.7 cells expressing TurboID-STING were compared by LC-MS/MS analysis. |
HostingRepository | jPOST |
AnnounceDate | 2023-03-04 |
AnnouncementXML | Submission_2023-03-03_07:00:16.437.xml |
DigitalObjectIdentifier | |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Kohei Nishino |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | S-carboxamidomethyl-L-cysteine; N6-biotinyl-L-lysine; L-methionine sulfoxide; alpha-amino acetylated residue |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2022-03-04 00:25:03 | ID requested | |
⏵ 1 | 2023-03-03 07:00:16 | announced |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Biotinylated Peptides, Tamavidin 2-REV, BioID |
Contact List
Hidetaka Kosako | |
---|---|
lab head | |
Kohei Nishino | |
contact affiliation | Tokushima University |
dataset submitter |
Full Dataset Link List
jPOST dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001517/ |