PXD031950

PXD031950 is an original dataset announced via ProteomeXchange.

Title	the effect of long term (Mcl) and short term (DTR) neutropenia on the lung, skin and gut extracellular matrix (ECM) proteome, with a special focus on collagen hydroxylation
Description	to study the effect of long term (Mcl) and short term (DTR) neutropenia on the lung, skin and gut extracellular matrix (ECM) proteome, with a special focus on collagen hydroxylation, and compare it with control animals with normal neutrophil levels (WT), samples from 3 biological replicates per condition (WT, Mcl and DTR) were distributed in three independent Tandem Mass Tag (TMT) 10-plex experiments, one experiment per tissue.
HostingRepository	PRIDE
AnnounceDate	2025-02-28
AnnouncementXML	Submission_2025-02-28_02:10:48.558.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Elena Bonzon-Kulichenko
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2022-02-28 12:24:16	ID requested
⏵ 1	2025-02-28 02:10:48	announced

Dataset with its publication pending

submitter keyword: neutrophil collagen hydroxylation

Jesús Vázquez Cobos
contact affiliation	Cardiovascular Proteomics Laboratory & Proteomics Unit Vascular Pathophysiology Area Centro Nacional de Investigaciones Cardiovasculares Melchor Fernández Almagro núm. 3 28029 Madrid
contact email	jvazquez@cnic.es
lab head
Elena Bonzon-Kulichenko
contact affiliation	University of Castilla-La Mancha
contact email	elena.bonzon@uclm.es
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2025/02/PXD031950

PRIDE project URI

• PRIDE
  1. PXD031950
     1. Label: PRIDE project
     2. Name: the effect of long term (Mcl) and short term (DTR) neutropenia on the lung, skin and gut extracellular matrix (ECM) proteome, with a special focus on collagen hydroxylation