PXD031334

PXD031334 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Site-specific N-glycolylation profiles in a5b1 integrin from rat liver
Description	To visualize glycosylation in the context of the integrin structure, the quantitative site-specific glycosylation profiles of a5b1 integrin were determined and the main representative glycans were mapped onto a homology model of rat a5b1 integrin in its bent-closed inactive conformation.
HostingRepository	PRIDE
AnnounceDate	2024-07-25
AnnouncementXML	Submission_2024-07-25_09:49:28.833.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Proteomics Core Facility
SpeciesList	scientific name: Rattus norvegicus (Rat); NCBI TaxID: 10116; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; complex glycosylation; iodoacetamide derivatized residue
Instrument	Q Exactive HF; Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-01-30 11:06:26	ID requested
⏵ 1	2024-07-25 09:49:29	announced

Publication List

10.1111/BOC.202200017;

10.1111/BOC.202200017;

Keyword List

submitter keyword: rat, glycoproteomics,Human papillIntegrins, liver, orbitrap, LC-MS/MS

submitter keyword: rat, glycoproteomics,Human papillIntegrins, liver, orbitrap, LC-MS/MS

Contact List

Ekaterina Mirgorodskaya
contact affiliation	Proteomics Core Facility at University of Gothenburg Box 413, SE 405 30 Gothenburg, Sweden
contact email	ekaterina.mirgorodskaya@gu.se
lab head
Proteomics Core Facility
contact affiliation	SAMBIO Core Facilities, Sahgrenska Academy, University of Gothenburg
contact email	gupcf@outlook.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/07/PXD031334
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/07/PXD031334

PRIDE project URI

Repository Record List

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