PXD031212

PXD031212 is an original dataset announced via ProteomeXchange.

Title	Shotgun proteomic data obtained from whole cell lysates of ´Geobacer ammonificans´
Description	Dissimilatory nitrate reduction to ammonia (DNRA) is an important part of the microbial N-cycle both in natural and man-made habitats, although its significance in wastewater treatment plants is not well understood. Nitrate-limited enrichments from activated sludge with acetate as e-donor consistently resulted in a domination of two closely related genotypes of ammonifying members of Deltaproteobacteria belonging to the genus Geobacter. One of the two was isolated in pure culture which appears to be an extremely specialized ammonifier, actively growing only with acetate as e-donor and C source and nitrate as e-acceptor. The shotgun proteomic raw data obtained from whole cell lysates are provided. First and corresponding author: Dimitry Y. Sorokin soroc@inmi.ru; d.sorokin@tudelft.nl
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:53:30.328.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Martin Pabst
SpeciesList	scientific name: Geobacter; NCBI TaxID: 28231;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2022-01-25 00:34:57	ID requested
1	2023-07-11 03:59:20	announced
⏵ 2	2024-10-22 05:53:30	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: QE plus, shotgun proteomics, discovery proteomics,Geobacter

Dr. Martin Pabst
contact affiliation	Department of Biotechnology, Delft University of Technology, The Netherlands.
contact email	m.pabst@tudelft.nl
lab head
Martin Pabst
contact affiliation	TUD
contact email	m.pabst@tudelft.nl
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD031212

PRIDE project URI

• PRIDE
  1. PXD031212
     1. Label: PRIDE project
     2. Name: Shotgun proteomic data obtained from whole cell lysates of ´Geobacer ammonificans´