PXD031108

PXD031108 is an original dataset announced via ProteomeXchange.

Title	Identification of neoantigens in oesophageal adenocarcinoma
Description	We present data from tissues of seven oesophageal adenocarcinomas of CD4 and CD8 T cell epitopes eluted from the cell surface using mass spectrometry (immunopeptidomics) of presented HLA bound peptides. This dataset forms part of the publication: Nicholas, B., Bailey, A., McCann, K.J., Wood, O., Walker, R.C., Parker, R., Ternette, N., Elliott, T., Underwood, T.J., Johnson, P. and Skipp, P. (2022), Identification of neoantigens in esophageal adenocarcinoma. Immunology. Accepted Author Manuscript. https://doi.org/10.1111/imm.13578
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:54:13.275.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD031108
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Alistair Bailey
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2022-01-20 09:04:00	ID requested
1	2022-09-27 05:49:15	announced
⏵ 2	2023-11-14 08:54:13	announced	2023-11-14: Updated project metadata.

10.6019/PXD031108;

submitter keyword: Human,oesophageal adenocarcinoma,immunopeptidome,HLA

Paul J Skipp
contact affiliation	Centre for Proteomic Research B85, Life Sciences Building, University of Southampton, University Road , Highfield Southampton, Hants. SO17 1BJ United Kingdom
contact email	pjss@soton.ac.uk
lab head
Alistair Bailey
contact affiliation	University of Southampton
contact email	ab604@soton.ac.uk
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD031108
     1. Label: PRIDE project
     2. Name: Identification of neoantigens in oesophageal adenocarcinoma