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PXD031096

PXD031096 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleTo decipher an overall structure of a bacterial anti-plasmid defense system using cross-linking mass spectrometry.
DescriptionThe submitted data is from a BS3 crosslinked sample. The anti-plasmid defense system complex constitutes JetA, JetB, JetC, and JetD subunits. In this work, these four subunits were mixed to form a holo-subunit complex which was followed by crosslinking with isotopically/non-isotopically (1:1) mixture of BS3 reagent. The interactin subunit crosslinks were identified and this information was integrated with alphafold2 enabled models to construct an overall picture of a highly dynamic complex assembly
HostingRepositoryPRIDE
AnnounceDate2023-11-14
AnnouncementXMLSubmission_2023-11-14_08:55:06.531.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterAmar Deep
SpeciesList scientific name: Pseudomonas aeruginosa PA14; NCBI TaxID: 652611;
ModificationListiodoacetamide derivatized residue
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02022-01-19 09:35:33ID requested
12022-10-06 12:12:54announced
22023-11-14 08:55:07announced2023-11-14: Updated project metadata.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Bacterial anti-plasmid defense system,Cross-linking mass spectrometry, JetABCD, Condensin like machinery, Toprim
Contact List
Kevin D. Corbett
contact affiliationDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, California, USA.
contact emailkcorbett@ucsd.edu
lab head
Amar Deep
contact affiliationUniversity of California, San Diego.
contact emailadeep@ucsd.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
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