PXD030706

PXD030706 is an original dataset announced via ProteomeXchange.

Title	Targeted Feature Detection and Extraction
Description	Missed identifications of peptides in data-dependent acquisition (DDA) proteomics experiments is an obstacle n the precise determination of which proteins are present in a sample and their relative abundance. Efforts pular analysis workfl raw data to transfer a pehtiraw identifiher. Another approach ipeptide identifictatioimpute peptide idich they were missing.Wen which they were missing.We propoted xtractio called targeted extractio called targeted extractio called targeted extxactio c called targeted eractio called targeted extractio called targeted extraugh which prees t t in a run. The modeeiseetween obdentifieference library o pep from muliseetween obdentifieference library o pep from mulise the risk of drawing nimise the risk of drawing nimise the risk of dra drg nim nimihe the risk of drawing niminimise the risk of drawiies, oate of false discs Verechgtperforms the poe (FDR)tios of decoys as targtperforms the poe (FDR)tios of decoys as targtperforms the poe (FDR)tios of decoys as targtperforms the poe (FDR)tios of decoys as targtperforms the popular anand MSFraggt will be a vaprabeomics ribution to the proteomics ribution to the proteomics ribution to the proteomics ribution to the proteomics ribution to the proteomics ribution to the proteomics ribution to the proteomics toolbox for protein quantification.
HostingRepository	PRIDE
AnnounceDate	2022-03-07
AnnouncementXML	Submission_2022-03-07_06:15:32.013.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD030706
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Daryl Wilding-McBride
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	timsTOF Pro

Revision	Datetime	Status	ChangeLog Entry
0	2022-01-04 02:19:30	ID requested
⏵ 1	2022-03-07 06:15:32	announced

Dataset with its publication pending

submitter keyword: feature detection,timstof,ion mobility,peptide identification,mass spectrometry

Andrew Webb
contact affiliation	Proteomics Laboratory, The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Melbourne, Victoria 3052, Australia
contact email	webb@wehi.edu.au
lab head
Daryl Wilding-McBride
contact affiliation	The Walter and Eliza Hall Institute of Medical Research
contact email	daryl.wmcb@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/03/PXD030706

PRIDE project URI

• PRIDE
  1. PXD030706
     1. Label: PRIDE project
     2. Name: Targeted Feature Detection and Extraction