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PXD030452

PXD030452 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleCTCF ChIP-MS from native chromatin in mouse embryonic stem cells (mESCs) and motor neurons (MNs)
DescriptionTo identify CTCF partners and co-localizing proteins from native chromatin in mESCs and MNs in endogenous conditions. The goal is to identify proteins within each sample with respect to wild-type control for each.
HostingRepositoryPRIDE
AnnounceDate2022-02-11
AnnouncementXMLSubmission_2022-02-24_05:47:30.849.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterHavva Ortabozkoyun Kara
SpeciesList scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationListNo PTMs are included in the dataset
InstrumentLTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-12-16 11:54:00ID requested
12022-02-11 06:54:19announced
22022-02-24 05:47:31announced2022-02-24: Updated publication reference for PubMed record(s): 35145304.
Publication List
Ortabozkoyun H, Huang PY, Cho H, Narendra V, LeRoy G, Gonzalez-Buendia E, Skok JA, Tsirigos A, Mazzoni EO, Reinberg D, CRISPR and biochemical screens identify MAZ as a cofactor in CTCF-mediated insulation at Hox clusters. Nat Genet, 54(2):202-212(2022) [pubmed]
Keyword List
submitter keyword: Mouse, native chromatin, CTCF partners, CTCF ChIP-MS, LC-MS/MS
Contact List
Danny Reinberg
contact affiliationHoward Hughes Medical Institute NYU School of Medicine-Smilow Research Center Biochemistry Department
contact emailDanny.Reinberg@nyulangone.org
lab head
Havva Ortabozkoyun Kara
contact affiliationNew York University School of Medicine
contact emailho503@nyulangone.org
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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