PXD030452

PXD030452 is an original dataset announced via ProteomeXchange.

Title	CTCF ChIP-MS from native chromatin in mouse embryonic stem cells (mESCs) and motor neurons (MNs)
Description	To identify CTCF partners and co-localizing proteins from native chromatin in mESCs and MNs in endogenous conditions. The goal is to identify proteins within each sample with respect to wild-type control for each.
HostingRepository	PRIDE
AnnounceDate	2022-02-11
AnnouncementXML	Submission_2022-02-24_05:47:30.849.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Havva Ortabozkoyun Kara
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2021-12-16 11:54:00	ID requested
1	2022-02-11 06:54:19	announced
⏵ 2	2022-02-24 05:47:31	announced	2022-02-24: Updated publication reference for PubMed record(s): 35145304.

Ortabozkoyun H, Huang PY, Cho H, Narendra V, LeRoy G, Gonzalez-Buendia E, Skok JA, Tsirigos A, Mazzoni EO, Reinberg D, CRISPR and biochemical screens identify MAZ as a cofactor in CTCF-mediated insulation at Hox clusters. Nat Genet, 54(2):202-212(2022) [pubmed]

submitter keyword: Mouse, native chromatin, CTCF partners, CTCF ChIP-MS, LC-MS/MS

Danny Reinberg
contact affiliation	Howard Hughes Medical Institute NYU School of Medicine-Smilow Research Center Biochemistry Department
contact email	Danny.Reinberg@nyulangone.org
lab head
Havva Ortabozkoyun Kara
contact affiliation	New York University School of Medicine
contact email	ho503@nyulangone.org
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD030452

PRIDE project URI

• PRIDE
  1. PXD030452
     1. Label: PRIDE project
     2. Name: CTCF ChIP-MS from native chromatin in mouse embryonic stem cells (mESCs) and motor neurons (MNs)