PXD030342

PXD030342 is an original dataset announced via ProteomeXchange.

Title	Pancreatic cell lines MS2/MS3 TMT labeled Rescored with Prosit
Description	We Have a pancreas MS2/MS3 dataset in this project. We predict all spectra in the datasets via Prosit then rescore. We have 100% FDR maxquant search results, and using percolator we get 1%FDR filtered results with andromeda Scores and another with features extracted from Prosit predictions.
HostingRepository	PRIDE
AnnounceDate	2023-05-14
AnnouncementXML	Submission_2023-05-14_14:57:11.733.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	WassimGabriel
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2021-12-12 14:26:21	ID requested
1	2022-06-09 15:26:37	announced
⏵ 2	2023-05-14 14:57:12	announced	2023-05-14: Updated project metadata.

Dataset with its publication pending

ProteomeXchange project tag: EPIC-XS, Proteometools

submitter keyword: Human, MS3, MS2, OT, TMT11plex, IT, Orbitrap, Iontrap

MathiasWilhelm
contact affiliation	Technichal University in Munich
contact email	mathias.wilhelm@tum.de
lab head
WassimGabriel
contact affiliation	Technical University in Munich
contact email	wassim.gabriel@tum.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/06/PXD030342

PRIDE project URI

• PRIDE
  1. PXD030342
     1. Label: PRIDE project
     2. Name: Pancreatic cell lines MS2/MS3 TMT labeled Rescored with Prosit