PXD030335 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Identification of TBBPA-degraders in anaerobic bioreactor at environmentally relevant concentrations by combined protein-based stable isotope probing and metagenomics |
Description | The aim of this study was to identify TBBPA-degrading organisms in a complex microbial community by a metagenome-based functional metaproteomic approach, using protein-based stable isotope probing (protein-SIP). Firstly, the degradation kinetics were evaluated in order to simulate the decrease of residual mass of the labelled compound based on experimental data. In sequence, a metagenome was generated, and biomass was collected in different time-points for protein-SIP in incubations with 13C-TBBPA. This approach allowed for the identification organisms assimilating labelled carbon from the cometabolic degradation of a micropollutant. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:54:11.348.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jan Struckmann Poulsen |
SpeciesList | scientific name: anaerobic digester metagenome; NCBI TaxID: 1263854; |
ModificationList | iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-12-12 14:03:56 | ID requested | |
1 | 2022-09-12 03:48:04 | announced | |
⏵ 2 | 2023-11-14 08:54:11 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: anaerobic digestion,Stable isotope probing, Tetrabromobisphenol A, metaproteomics |
Contact List
Jeppe Lund Nielsen |
contact affiliation | aDepartment of Chemistry and Bioscience, Aalborg University, Aalborg East, Denmark |
contact email | jln@bio.aau.dk |
lab head | |
Jan Struckmann Poulsen |
contact affiliation | Aalborg University |
contact email | jsp@bio.aau.dk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030335 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD030335
- Label: PRIDE project
- Name: Identification of TBBPA-degraders in anaerobic bioreactor at environmentally relevant concentrations by combined protein-based stable isotope probing and metagenomics