PXD030327

PXD030327 is an original dataset announced via ProteomeXchange.

Title	Enhanced competition at the nano-bio interface enables ultra-deep coverage of the human plasma proteome
Description	We demonstrate the importance of the protein to NP-surface ratio (P/NP) and model protein corona formation dynamics, which determine the competition between proteins for binding.
HostingRepository	PRIDE
AnnounceDate	2022-09-04
AnnouncementXML	Submission_2022-09-03_17:17:33.287.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Theo Platt
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	timsTOF Pro 2

Revision	Datetime	Status	ChangeLog Entry
0	2021-12-12 05:14:51	ID requested
⏵ 1	2022-09-03 17:17:34	announced

Ferdosi S, Stukalov A, Hasan M, Tangeysh B, Brown TR, Wang T, Elgierari EM, Zhao X, Huang Y, Alavi A, Lee-McMullen B, Chu J, Figa M, Tao W, Wang J, Goldberg M, O'Brien ES, Xia H, Stolarczyk C, Weissleder R, Farias V, Batzoglou S, Siddiqui A, Farokhzad OC, Hornburg D, Enhanced Competition at the Nano-Bio Interface Enables Comprehensive Characterization of Protein Corona Dynamics and Deep Coverage of Proteomes. Adv Mater, 34(44):e2206008(2022) [pubmed]

submitter keyword: Proteomics, Nanoparticles, Mass spectrometry, Nano-bio interactions, Protein corona, Vroman effect, Machine learning

Daniel Hornburg
contact affiliation	Seer Inc.
contact email	dhornburg@seer.bio
lab head
Theo Platt
contact affiliation	Seer
contact email	tplatt@seer.bio
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/09/PXD030327

PRIDE project URI

• PRIDE
  1. PXD030327
     1. Label: PRIDE project
     2. Name: Enhanced competition at the nano-bio interface enables ultra-deep coverage of the human plasma proteome