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PXD030304

PXD030304 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePan-cancer proteomic map of 949 human cell lines (ProCan-DepMapSanger)
DescriptionThis pan-cancer cell line proteomic atlas comprises proteomic data acquired by data independent acquisition (specifically, SWATH) mass spectrometry for 949 cancer cell lines. Cell lines were processed in technical triplicate, with duplicates acquired on different mass spectrometers, alongside HEK293T cell line control samples processed across the experimental period. For further details, refer to the publication that accompanies this data deposition.
HostingRepositoryPRIDE
AnnounceDate2023-06-16
AnnouncementXMLSubmission_2023-06-16_01:51:03.739.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterRebeccaPoulos
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListiodoacetamide derivatized residue
InstrumentTripleTOF 6600
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-12-11 15:18:51ID requested
12022-07-13 15:02:00announced
22023-06-16 01:51:04announced2023-06-16: Updated project metadata.
Publication List
Gon, รง, alves E, Poulos RC, Cai Z, Barthorpe S, Manda SS, Lucas N, Beck A, Bucio-Noble D, Dausmann M, Hall C, Hecker M, Koh J, Lightfoot H, Mahboob S, Mali I, Morris J, Richardson L, Seneviratne AJ, Shepherd R, Sykes E, Thomas F, Valentini S, Williams SG, Wu Y, Xavier D, MacKenzie KL, Hains PG, Tully B, Robinson PJ, Zhong Q, Garnett MJ, Reddel RR, Pan-cancer proteomic map of 949 human cell lines. Cancer Cell, 40(8):835-849.e8(2022) [pubmed]
Keyword List
submitter keyword: proteomics, DIA, SWATH,Cancer, cell line
Contact List
QingZhong
contact affiliationHead, Cancer Data Science (ProCan), Children's Medical Research Institute, The University of Sydney, Westmead, NSW, Australia
contact emailqzhong@cmri.org.au
lab head
RebeccaPoulos
contact affiliationChildren's Medical Research Institute, University of Sydney
contact emailrpoulos@cmri.org.au
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/07/PXD030304
PRIDE project URI
Repository Record List
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