PXD030304

PXD030304 is an original dataset announced via ProteomeXchange.

Title	Pan-cancer proteomic map of 949 human cell lines (ProCan-DepMapSanger)
Description	This pan-cancer cell line proteomic atlas comprises proteomic data acquired by data independent acquisition (specifically, SWATH) mass spectrometry for 949 cancer cell lines. Cell lines were processed in technical triplicate, with duplicates acquired on different mass spectrometers, alongside HEK293T cell line control samples processed across the experimental period. For further details, refer to the publication that accompanies this data deposition.
HostingRepository	PRIDE
AnnounceDate	2023-06-16
AnnouncementXML	Submission_2023-06-16_01:51:03.739.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	RebeccaPoulos
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	TripleTOF 6600

Revision	Datetime	Status	ChangeLog Entry
0	2021-12-11 15:18:51	ID requested
1	2022-07-13 15:02:00	announced
⏵ 2	2023-06-16 01:51:04	announced	2023-06-16: Updated project metadata.

Gon, ç, alves E, Poulos RC, Cai Z, Barthorpe S, Manda SS, Lucas N, Beck A, Bucio-Noble D, Dausmann M, Hall C, Hecker M, Koh J, Lightfoot H, Mahboob S, Mali I, Morris J, Richardson L, Seneviratne AJ, Shepherd R, Sykes E, Thomas F, Valentini S, Williams SG, Wu Y, Xavier D, MacKenzie KL, Hains PG, Tully B, Robinson PJ, Zhong Q, Garnett MJ, Reddel RR, Pan-cancer proteomic map of 949 human cell lines. Cancer Cell, 40(8):835-849.e8(2022) [pubmed]

submitter keyword: proteomics, DIA, SWATH,Cancer, cell line

QingZhong
contact affiliation	Head, Cancer Data Science (ProCan), Children's Medical Research Institute, The University of Sydney, Westmead, NSW, Australia
contact email	qzhong@cmri.org.au
lab head
RebeccaPoulos
contact affiliation	Children's Medical Research Institute, University of Sydney
contact email	rpoulos@cmri.org.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/07/PXD030304

PRIDE project URI

• PRIDE
  1. PXD030304
     1. Label: PRIDE project
     2. Name: Pan-cancer proteomic map of 949 human cell lines (ProCan-DepMapSanger)