PXD030291

PXD030291 is an original dataset announced via ProteomeXchange.

Title	Atlantic salmon gastric mucosa LC-MSMS
Description	The Atlantic salmon (Salmo salar) genome contains 10 chitinase encoding genes, but little is known about the function of these chitinases. Three of the chitinase genes have previously been shown to be expressed in the stomach tissue of Atlantic salmon. In the current study we show that the protein products of these genes, the family 18 glycoside hydrolase (GH18) chitinases, Chia.3, Chia.4 and Chia.7 are secreted into the stomach mucosa and are amongst the most abundant proteins in this matrix.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:30:06.028.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Matilde Mengkrog Holen
SpeciesList	scientific name: Salmo salar (Atlantic salmon); NCBI TaxID: 8030;
ModificationList	2-pyrrolidone-5-carboxylic acid (Gln); acetylated residue; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF-X

Revision	Datetime	Status	ChangeLog Entry
0	2021-12-10 02:21:52	ID requested
1	2022-05-08 05:27:01	announced
⏵ 2	2023-11-14 08:30:06	announced	2023-11-14: Updated project metadata.

Dataset with its publication pending

submitter keyword: LC-MSMS, stomach, mucosa,Atlantic salmon

Gustav Vaaje-Kolstad
contact affiliation	The Protein Engineering and Proteomics Group (PEP), Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Norway
contact email	gustav.vaaje-kolstad@nmbu.no
lab head
Matilde Mengkrog Holen
contact affiliation	Norwegian University of Life Sciences
contact email	mholen@nmbu.no
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD030291

PRIDE project URI

• PRIDE
  1. PXD030291
     1. Label: PRIDE project
     2. Name: Atlantic salmon gastric mucosa LC-MSMS