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PXD030166

PXD030166 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleAggregation under genotoxic conditions in HEK293T and U2OS cells
DescriptionThis dataset consists of 2 independent experiments. The first research aim was to identify the proteins that aggregate in HEK293T cells treated with the chemotherapeutic agent camptothecin (CPT), the second to identify the proteins that aggregate in U2OS cells after a loss of the checkpoint kinase ATM. For the first experiment, cells were treated for 24 hours with vehicle (DMSO) or CPT, left to recover for 48 hours, and harvested. For the second experiment, wild-type and ATM KO cells were grown for 72 hours and harvested. For both experiments, aggregated proteins were isolated by a differential detergent fractionation protocol, which ultimately resulted in a 1% SDS insoluble protein fraction. These proteins were solubilized in 8M urea.
HostingRepositoryPRIDE
AnnounceDate2023-11-14
AnnouncementXMLSubmission_2023-11-14_09:00:52.209.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterLuciano Di Stefano
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListiodoacetamide derivatized residue
InstrumentOrbitrap Exploris 480
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-12-03 06:38:47ID requested
12022-02-01 08:12:27announced
22022-03-15 04:55:01announced2022-03-15: Updated project metadata.
32022-04-07 09:16:26announced2022-04-07: Updated project metadata.
42022-04-07 15:18:49announced2022-04-07: Updated project metadata.
52023-11-14 09:00:58announced2023-11-14: Updated project metadata.
Publication List
Huiting W, Dekker SL, van der Lienden JCJ, Mergener R, Musskopf MK, Furtado GV, Gerrits E, Coit D, Oghbaie M, Di Stefano LH, Schepers H, van Waarde-Verhagen MAWH, Couzijn S, Barazzuol L, LaCava J, Kampinga HH, Bergink S, Targeting DNA topoisomerases or checkpoint kinases results in an overload of chaperone systems, triggering aggregation of a metastable subproteome. Elife, 11():(2022) [pubmed]
Keyword List
submitter keyword: Human, insoluble, genotoxic, CPT, U2OS, camptothecin, aggregation
Contact List
John LaCava
contact affiliationLaboratory of Macromolecules and Interactomes,ERIBA-UMCG, Groningen, The Netherlands
contact emailj.p.lacava@umcg.nl
lab head
Luciano Di Stefano
contact affiliationERIBA-UMCG
contact emaill.h.di.stefano@umcg.nl
dataset submitter
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Dataset FTP location
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