PXD030143

PXD030143 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	DIA-MS of plethodontid salamander sperm
Description	Plethodontid salamanders are the largest family of salamanders and are classic models for studying the effect of rapidly evolving courtship pheromones on mating behavior and reproductive success. Despite interests in plethodontid reproduction, very little is known about the molecular composition of salamander gametes, as the extraordinary sizes of their genomes have impaired the development of various omic-scale resources. To identify what proteins may be expressed in salamander sperm, we performed DIA-MS on sperm samples from two plethodontid species, Plethodon shermani and Desmognathus ocoee. As the first detailed study of salamander sperm, this study partially fills in a critical taxonomic gap in the study of fertilization proteins in vertebrates.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:35:55.661.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Damien Wilburn
SpeciesList	scientific name: Plethodon shermani; NCBI TaxID: 263671; scientific name: Desmognathus ocoee; NCBI TaxID: 179530;
ModificationList	iodoacetamide derivatized residue
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-12-02 10:54:46	ID requested
1	2022-04-19 06:59:52	announced
⏵ 2	2024-10-22 05:35:56	announced	2024-10-22: Updated project metadata.

Publication List

10.3389/fcell.2022.828947;
Wilburn DB, Kunkel CL, Feldhoff RC, Feldhoff PW, Searle BC, Recurrent Co-Option and Recombination of Cytokine and Three Finger Proteins in Multiple Reproductive Tissues Throughout Salamander Evolution. Front Cell Dev Biol, 10():828947(2022) [pubmed]

10.3389/fcell.2022.828947;

Wilburn DB, Kunkel CL, Feldhoff RC, Feldhoff PW, Searle BC, Recurrent Co-Option and Recombination of Cytokine and Three Finger Proteins in Multiple Reproductive Tissues Throughout Salamander Evolution. Front Cell Dev Biol, 10():828947(2022) [pubmed]

Keyword List

submitter keyword: salamander, sperm,plethodontid

submitter keyword: salamander, sperm,plethodontid

Contact List

Brian Searle
contact affiliation	Biomedical Informatics, The Ohio State University, United States
contact email	Brian.Searle@osumc.edu
lab head
Damien Wilburn
contact affiliation	The Ohio State University
contact email	Damien.Wilburn@osumc.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD030143
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD030143

PRIDE project URI

Repository Record List

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