PXD030098 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Relative quantification of 15N labeled acinus-2 pinin-1 and 14N labeled Col through Data Dependent Acquisition to obtain peptide information for targeted Parallel Reaction Monitoring experiment |
Description | To examine the properties of 14N and 15N labeled peptides using Parallel Reaction Monitoring (PRM) on a high resolution, high accuracy mass spectrometer we first set up this DDA experiment. The purpose of this experiment was to choose peptides that are good candidates for targeted quantification. The retention times, mass, and charge from 42 candidate peptides were acquired for targeted quantification. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:37:41.026.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Shouling Xu |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-12-02 02:21:28 | ID requested | |
1 | 2022-06-09 04:30:02 | announced | |
⏵ 2 | 2024-10-22 05:37:41 | announced | 2024-10-22: Updated project metadata. |
Publication List
Reyes AV, Shrestha R, Baker PR, Chalkley RJ, Xu SL, N Labeled Samples for Quantification. Front Plant Sci, 13():832585(2022) [pubmed] |
10.3389/fpls.2022.832585; |
Keyword List
submitter keyword: Arabidopsis,Quantification, Data dependent acquisition, 15N Metabolic labeling, Relative quantification, SILAC, Protein Prospector |
Contact List
Shouling Xu |
contact affiliation | Carnegie Mass Spectrometry Facility, Carnegie Institution for Science at Stanford |
contact email | sxu@ciw.edu |
lab head | |
Shouling Xu |
contact affiliation | Carnegie Institution at Stanford |
contact email | sxu@ciw.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/06/PXD030098 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD030098
- Label: PRIDE project
- Name: Relative quantification of 15N labeled acinus-2 pinin-1 and 14N labeled Col through Data Dependent Acquisition to obtain peptide information for targeted Parallel Reaction Monitoring experiment