PXD030098

PXD030098 is an original dataset announced via ProteomeXchange.

Title	Relative quantification of 15N labeled acinus-2 pinin-1 and 14N labeled Col through Data Dependent Acquisition to obtain peptide information for targeted Parallel Reaction Monitoring experiment
Description	To examine the properties of 14N and 15N labeled peptides using Parallel Reaction Monitoring (PRM) on a high resolution, high accuracy mass spectrometer we first set up this DDA experiment. The purpose of this experiment was to choose peptides that are good candidates for targeted quantification. The retention times, mass, and charge from 42 candidate peptides were acquired for targeted quantification.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:37:41.026.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Shouling Xu
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-12-02 02:21:28	ID requested
1	2022-06-09 04:30:02	announced
⏵ 2	2024-10-22 05:37:41	announced	2024-10-22: Updated project metadata.

Reyes AV, Shrestha R, Baker PR, Chalkley RJ, Xu SL, N Labeled Samples for Quantification. Front Plant Sci, 13():832585(2022) [pubmed]

10.3389/fpls.2022.832585;

submitter keyword: Arabidopsis,Quantification, Data dependent acquisition, 15N Metabolic labeling, Relative quantification, SILAC, Protein Prospector

Shouling Xu
contact affiliation	Carnegie Mass Spectrometry Facility, Carnegie Institution for Science at Stanford
contact email	sxu@ciw.edu
lab head
Shouling Xu
contact affiliation	Carnegie Institution at Stanford
contact email	sxu@ciw.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/06/PXD030098

PRIDE project URI

• PRIDE
  1. PXD030098
     1. Label: PRIDE project
     2. Name: Relative quantification of 15N labeled acinus-2 pinin-1 and 14N labeled Col through Data Dependent Acquisition to obtain peptide information for targeted Parallel Reaction Monitoring experiment