PXD029853

PXD029853 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Deep proteome analysis by DIA-MS with FAIMS
Description	We aimed to expand the proteome coverage by single-shot measurements using optimizing high-field asymmetric waveform ion mobility spectrometry (FAIMS) parameters in DIA-MS. In addition, we analyzed host proteins in the feces of control and repeated social defeat stress (R-SDS) model mice with optimal FAIMS parameters in DIA-MS.
HostingRepository	jPOST
AnnounceDate	2022-04-28
AnnouncementXML	Submission_2022-09-18_03:36:53.577.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Yusuke Kawashima
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	S-carboxamidomethyl-L-cysteine; unknown modification
Instrument	Orbitrap Exploris 480

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-11-21 15:10:33	ID requested
1	2022-04-27 08:00:04	announced
2	2022-05-09 03:32:35	announced	2022-05-09: Updated PubMed.
⏵ 3	2022-09-18 03:36:54	announced	2022-09-18: Updated FTP location.

Publication List

Kawashima Y, Nagai H, Konno R, Ishikawa M, Nakajima D, Sato H, Nakamura R, Furuyashiki T, Ohara O, Single-Shot 10K Proteome Approach: Over 10,000 Protein Identifications by Data-Independent Acquisition-Based Single-Shot Proteomics with Ion Mobility Spectrometry. J Proteome Res, 21(6):1418-1427(2022) [pubmed]

Kawashima Y, Nagai H, Konno R, Ishikawa M, Nakajima D, Sato H, Nakamura R, Furuyashiki T, Ohara O, Single-Shot 10K Proteome Approach: Over 10,000 Protein Identifications by Data-Independent Acquisition-Based Single-Shot Proteomics with Ion Mobility Spectrometry. J Proteome Res, 21(6):1418-1427(2022) [pubmed]

Keyword List

submitter keyword: single-shot proteomics, DIA-MS, FAIMS, HEK293 cell, feces, repeated social defeat stress

submitter keyword: single-shot proteomics, DIA-MS, FAIMS, HEK293 cell, feces, repeated social defeat stress

Contact List

Yusuke Kawashima
lab head
Yusuke Kawashima
contact affiliation	Kazusa DNA Research Institute
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001391/

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001391/