PXD029638

PXD029638 is an original dataset announced via ProteomeXchange.

Title	Proteomic comparisons of autophagy mutant, salicylic acid defiscient mutant and wild type plants grown in ideal nutrition and in low nitrate and low sulfate conditions.
Description	Genotypes used are Arabidopsis thaliana (L.) Col-0 wild-type, atg5.3 mutant (SALK_020601), sid2.2 (Dewdney et al., 2000) and the atg5.3/sid2.2 double mutant that has been previously characterized by Yoshimoto et al. Plant Cell (2009). Plants were cultivated under control conditions (ideal nutrition N+S+; 10mM NO3- and 0.266mM SO42-), low nitrate (N-; 2 mM NO3- and 0.266mM SO42-), or low sulfate (S-; 10mM NO3- and 0.016mM SO42-) conditions, under in short days (160 micromol.m-2.s-1; 8 h light, 16 h dark) in growth chamber as described by Havé et al. 2019 New Phytologist. Rosettes were harvested at vegetative stage 60 days after sowing, 2-3 hours after the beginning of the photoperiod. Two consecutive cultures (C1 and C2) were performed at several month interval. For each culture, three plant repeats (R1-R3) were collected, each repeat was a mix of >6 rosettes. Details can be found in Havé et al. (2019) New Phytologist (doi: 10.1111/nph.15913). Associated publications are Havé et al. (2018) JXB (doi:10.1093/jxb/erx482), Havé et al. (2019) New Phytologist (doi: 10.1111/nph.15913) and Luo et al 2020 JXB (doi:10.1093/jxb/eraa337)
HostingRepository	PRIDE
AnnounceDate	2024-10-07
AnnouncementXML	Submission_2024-10-07_13:43:14.571.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Thierry Balliau
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	2-pyrrolidone-5-carboxylic acid (Glu); (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid; 2-pyrrolidone-5-carboxylic acid (Gln); acetylated residue; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Q Exactive Plus

Revision	Datetime	Status	ChangeLog Entry
0	2021-11-09 06:54:14	ID requested
⏵ 1	2024-10-07 13:43:14	announced

Dataset with its publication pending

submitter keyword: ATG5,autophagy, sulfate, SID2, nitrate

Céline MASCLAUX-DAUBRESSE
contact affiliation	INRAE - Institut Jean-Pierre Bourgin UMR1318 Team SATURNE: Senescence, AuTophagy, nUtrient Recycling and Nitrogen use Efficiency France
contact email	celine.masclaux-daubresse@inrae.fr
lab head
Thierry Balliau
contact affiliation	Plateforme d'Analyse Proteomique Paris Sud-Ouest Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE - Le Moulon, 91190, Gif-sur-Yvette, France
contact email	thierry.balliau@inrae.fr
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD029638
     1. Label: PRIDE project
     2. Name: Proteomic comparisons of autophagy mutant, salicylic acid defiscient mutant and wild type plants grown in ideal nutrition and in low nitrate and low sulfate conditions.