PXD029638 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic comparisons of autophagy mutant, salicylic acid defiscient mutant and wild type plants grown in ideal nutrition and in low nitrate and low sulfate conditions. |
Description | Genotypes used are Arabidopsis thaliana (L.) Col-0 wild-type, atg5.3 mutant (SALK_020601), sid2.2 (Dewdney et al., 2000) and the atg5.3/sid2.2 double mutant that has been previously characterized by Yoshimoto et al. Plant Cell (2009). Plants were cultivated under control conditions (ideal nutrition N+S+; 10mM NO3- and 0.266mM SO42-), low nitrate (N-; 2 mM NO3- and 0.266mM SO42-), or low sulfate (S-; 10mM NO3- and 0.016mM SO42-) conditions, under in short days (160 micromol.m-2.s-1; 8 h light, 16 h dark) in growth chamber as described by Havé et al. 2019 New Phytologist. Rosettes were harvested at vegetative stage 60 days after sowing, 2-3 hours after the beginning of the photoperiod. Two consecutive cultures (C1 and C2) were performed at several month interval. For each culture, three plant repeats (R1-R3) were collected, each repeat was a mix of >6 rosettes. Details can be found in Havé et al. (2019) New Phytologist (doi: 10.1111/nph.15913). Associated publications are Havé et al. (2018) JXB (doi:10.1093/jxb/erx482), Havé et al. (2019) New Phytologist (doi: 10.1111/nph.15913) and Luo et al 2020 JXB (doi:10.1093/jxb/eraa337) |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-07 |
AnnouncementXML | Submission_2024-10-07_13:43:14.571.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Thierry Balliau |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | 2-pyrrolidone-5-carboxylic acid (Glu); (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid; 2-pyrrolidone-5-carboxylic acid (Gln); acetylated residue; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive Plus |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-11-09 06:54:14 | ID requested | |
⏵ 1 | 2024-10-07 13:43:14 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: ATG5,autophagy, sulfate, SID2, nitrate |
Contact List
Céline MASCLAUX-DAUBRESSE |
contact affiliation | INRAE - Institut Jean-Pierre Bourgin UMR1318 Team SATURNE: Senescence, AuTophagy, nUtrient Recycling and Nitrogen use Efficiency France |
contact email | celine.masclaux-daubresse@inrae.fr |
lab head | |
Thierry Balliau |
contact affiliation | Plateforme d'Analyse Proteomique Paris Sud-Ouest Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE - Le Moulon, 91190, Gif-sur-Yvette, France |
contact email | thierry.balliau@inrae.fr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
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[ - ]
- PRIDE
- PXD029638
- Label: PRIDE project
- Name: Proteomic comparisons of autophagy mutant, salicylic acid defiscient mutant and wild type plants grown in ideal nutrition and in low nitrate and low sulfate conditions.