PXD029588

PXD029588 is an original dataset announced via ProteomeXchange.

Title	Shotgun proteomics (qMS) of zinc-replete wild type and zinc-limited wild type, altRP operon deletion mutant and its complement strain in Mycolicibacterium (Mycobacterium) smegmatis
Description	The study was designed to describe the effects of zinc limitation on gene expression in M. smegmatis by comparing the proteomes of zinc-replete and zinc-limited wild type. Additionally, the study informs how loss of the altRP operon impacts the proteome during zinc limitation by comparing the proteomes of zinc-limited ΔaltRP mutant to the zinc-replete and zinc-limited wild type, and to confirm which changes are complemented in the complement strain (ΔaltRP/c).
HostingRepository	PRIDE
AnnounceDate	2021-11-10
AnnouncementXML	Submission_2022-03-18_08:01:34.342.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Allexa Dow
SpeciesList	scientific name: Mycolicibacterium smegmatis MC2 155; NCBI TaxID: 246196;
ModificationList	iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2021-11-05 05:00:10	ID requested
1	2021-11-10 12:49:49	announced
⏵ 2	2022-03-18 08:01:35	announced	2022-03-18: Updated publication reference for PubMed record(s): 35222334.

Dow A, Burger A, Marcantonio E, Prisic S, . Front Microbiol, 13():811774(2022) [pubmed]

submitter keyword: Mycobacteria, ribosomal proteins, zinc, Mycobacterium smegmatis, multi-omics, transcriptome, proteome, oxidative stress response

Sladjana Prisic
contact affiliation	University of Hawaii at Manoa School of Life Sciences United States
contact email	prisic@hawaii.edu
lab head
Allexa Dow
contact affiliation	University of Hawaii at Manoa
contact email	allexa@hawaii.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD029588

PRIDE project URI

• PRIDE
  1. PXD029588
     1. Label: PRIDE project
     2. Name: Shotgun proteomics (qMS) of zinc-replete wild type and zinc-limited wild type, altRP operon deletion mutant and its complement strain in Mycolicibacterium (Mycobacterium) smegmatis