PXD029300

PXD029300 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Detection of mutated peptides of SARS-CoV-2 from COVID-19-infected patients
Description	This project involves the identification of mutated peptides from swab and plasma samples using an in-house developed Mutant Peptide Database (MPD)
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:47:48.270.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Abhilash Barpanda
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-10-22 06:58:10	ID requested
1	2023-05-10 15:09:39	announced
⏵ 2	2023-11-14 08:47:55	announced	2023-11-14: Updated project metadata.

Publication List

Rajoria S, Halder A, Tarnekar I, Pal P, Bansal P, Srivastava S, Detection of Mutant Peptides of SARS-CoV-2 Variants by LC/MS in the DDA Approach Using an In-House Database. J Proteome Res, 22(6):1816-1827(2023) [pubmed]

Rajoria S, Halder A, Tarnekar I, Pal P, Bansal P, Srivastava S, Detection of Mutant Peptides of SARS-CoV-2 Variants by LC/MS in the DDA Approach Using an In-House Database. J Proteome Res, 22(6):1816-1827(2023) [pubmed]

Keyword List

submitter keyword: SARS-CoV-2, Mass spectrometry, Mutant peptides, COVID-19

submitter keyword: SARS-CoV-2, Mass spectrometry, Mutant peptides, COVID-19

Contact List

Sanjeeva Srivastava
contact affiliation	Indian Institute of Technology, Bombay
contact email	sanjeeva@iitb.ac.in
lab head
Abhilash Barpanda
contact affiliation	IIT Bombay
contact email	avilash94@iitb.ac.in
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/05/PXD029300
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/05/PXD029300

PRIDE project URI

Repository Record List

[ + ]