PXD029035

PXD029035 is an original dataset announced via ProteomeXchange.

Title	Proteomic analysis of residues from experimental ceramics
Description	Ceramic vessels were used to cook fish/duck/black grouse, and proteomic studies were conducted on the ceramics to study how the choice of various database can affect the species identification and whether they can allow us to differentiate between fish and bird processing in ceramic vessels. We also employed a novel urea-GuHCl DES as the extraction reagent, and compared its efficiency with the conventional 6M GuHCl used for protein extraction (data available in project PXD027720). The samples used were same as the samples used in Peoject PXD027720, with a urea-GuHCl DES used as the extraction reagent instead of 6M GuHCl solution.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:53:38.148.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Manasij Pal Chowdhury
SpeciesList	scientific name: Cyprinidae; NCBI TaxID: 7953; scientific name: Esocidae; NCBI TaxID: 8008; scientific name: Anatidae; NCBI TaxID: 8830; scientific name: Phasianidae; NCBI TaxID: 9005;
ModificationList	iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2021-10-10 23:02:46	ID requested
1	2022-11-11 04:01:19	announced
⏵ 2	2023-11-14 08:53:38	announced	2023-11-14: Updated project metadata.

Dataset with its publication pending

submitter keyword: Deep Eutectic Solvent (DES), Cross-species proteomics,Residue analysis, Protein extraction, Archaeological potttery, LC-MS/MS

Dr. Michael Buckley
contact affiliation	Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK Interdisciplinary Centre for Ancient Life, Department of Earth and Environmental Sciences, University of Manchester, Oxford Road 131, Manchester, M13 9PL, UK
contact email	m.buckley@manchester.ac.uk
lab head
Manasij Pal Chowdhury
contact affiliation	University of Manchester
contact email	manasij.palchowdhury@postgrad.manchester.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD029035

PRIDE project URI

• PRIDE
  1. PXD029035
     1. Label: PRIDE project
     2. Name: Proteomic analysis of residues from experimental ceramics