PXD028862

PXD028862 is an original dataset announced via ProteomeXchange.

Title	Public T cell epitopes shared among SARS-CoV-2 Public T cell epitopes shared among SARS-CoV-2 variants are presented on prevalent HLA class I alleles variants are presented on prevalent HLA class I alleles
Description	In this project, we used MS-based immunopeptidomics and T-cell screening assays to identify SARS-CoV-2 epitopes. The MS identified epitopes were further valdiated for CD8 T cell immunogenecity. PBMC from a large number of patients infected with SARS-CoV-2 were used for valdiation of MS identifed and predected CD 8 T cell epotipes.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:36:45.177.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ravi Chand Bollineni
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2021-09-29 15:00:16	ID requested
1	2023-03-10 20:16:53	announced
⏵ 2	2023-11-14 08:36:47	announced	2023-11-14: Updated project metadata.

Meyer S, Blaas I, Bollineni RC, Delic-Sarac M, Tran TT, Knetter C, Dai KZ, Madssen TS, Vaage JT, Gustavsen A, Yang W, Nissen-Meyer LSH, Douvlataniotis K, Laos M, Nielsen MM, Thiede B, S, ø, raas A, Lund-Johansen F, Rustad EH, Olweus J, cell epitopes are conserved in SARS-CoV-2 variants. Cell Rep, 42(1):111995(2023) [pubmed]

submitter keyword: SARS-CoV-2, LC-MS, Immunopeptidomics

Johanna Olweus
contact affiliation	Department of Cancer Immunology, Institute for Cancer Research, Oslo University Hospital Radiumhospitalet, Oslo, Norway Institute of Clinical Medicine, University of Oslo, Oslo, Norway
contact email	johanna.olweus@medisin.uio.no
lab head
Ravi Chand Bollineni
contact affiliation	University of Oslo
contact email	r.c.bollineni@ibv.uio.no
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD028862

PRIDE project URI

• PRIDE
  1. PXD028862
     1. Label: PRIDE project
     2. Name: Public T cell epitopes shared among SARS-CoV-2 Public T cell epitopes shared among SARS-CoV-2 variants are presented on prevalent HLA class I alleles variants are presented on prevalent HLA class I alleles