PXD028644

PXD028644 is an original dataset announced via ProteomeXchange.

Title	Proteomic analysis reveals metabolic versatility of Amycolatopsis sp. BX17: a strain native from milpa agroecosystem soil
Description	Amycolatopsis sp. BX17 is an actinobacterium isolated from milpa soils that antagonizes the phytopathogenic fungus Fusarium graminearum. Metabolites secreted by the actinobacterium cultured in medium without glucose inhibited 100% the mycelial growth of F. graminearum RH1, while in medium supplemented with 20 g/L of glucose inhibition was 65%. With the aim of studying how the metabolism of strain BX17 is modulated by glucose, as the main carbon source, media with 0 and 20 g/L glucose were selected to analyze the intracellular proteins by quantitative label-free proteomic analysis.
HostingRepository	PRIDE
AnnounceDate	2022-02-14
AnnouncementXML	Submission_2022-02-14_01:39:40.552.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD028644
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	José Ángel Huerta-Ocampo
SpeciesList	scientific name: Amycolatopsis; NCBI TaxID: 1813;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive Plus

Revision	Datetime	Status	ChangeLog Entry
0	2021-09-20 02:45:52	ID requested
⏵ 1	2022-02-14 01:39:41	announced

Palafox-F, é, lix M, Huerta-Ocampo J Á, Hern, á, ndez-Ort, í, z M, Encarnaci, ó, n-Guevara S, V, á, zquez-Moreno L, Guzm, á, n-Partida AM, Cabrera R, Proteomic analysis reveals the metabolic versatility of Amycolatopsis sp. BX17: A strain native from milpa agroecosystem soil. J Proteomics, 253():104461(2022) [pubmed]

submitter keyword: Actinobacteria, Antifungal activity, Conservation agriculture, Intracellular proteins, Metabolism

José Ángel Huerta-Ocampo
contact affiliation	CONACYT-Centro de Investigación en Alimentación y Desarrollo A.C. Laboratorio de Bioquímica de Proteínas y Glicanos Carretera Gustavo Enrique Astiazarán Rosas No. 46 Colonia La Victoria. Código Postal 83304 Hermosillo, Sonora. México. +52 662 2892400 ext. 513
contact email	jose.huerta@ciad.mx
lab head
José Ángel Huerta-Ocampo
contact affiliation	CONACYT-Centro de Investigación en Alimentación y Desarrollo, A.C.
contact email	jose.huerta@ciad.mx
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD028644
     1. Label: PRIDE project
     2. Name: Proteomic analysis reveals metabolic versatility of Amycolatopsis sp. BX17: a strain native from milpa agroecosystem soil