PXD028583

PXD028583 is an original dataset announced via ProteomeXchange.

Title	Frequency of change determines effectiveness of microbial response strategies in sulfidic stream microbiomes
Description	Chemostat incubations were established and inoculated with sediments collected from Canyon Creek, Calgary, Alberta, Canada. The chemostats experienced oxic-anoxic change of different frequency, High-frequency, Medium-frequency and Low-frequency. 18 samples were collected at the end of the final oxic phase and the final anoxic phase in the triplicated chemostats for metagenomic and metaproteomic analysis. 26 genomes were assembled from metagenomes. Proteomes were used to investigate translational regulation of each population associated with a genome.
HostingRepository	PRIDE
AnnounceDate	2023-04-26
AnnouncementXML	Submission_2023-04-26_12:58:54.440.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	AngelaKouris
SpeciesList	scientific name: Acidovorax; NCBI TaxID: 12916; scientific name: Arenimonas sp.; NCBI TaxID: 1872635;
ModificationList	phosphorylated residue; acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2021-09-16 09:00:05	ID requested
⏵ 1	2023-04-26 12:58:54	announced

Dataset with its publication pending

submitter keyword: chemostat incubation, metagenome-assembled-genomes,Metaproteomics, metaproteome

MarcStrous
contact affiliation	University of Calgary
contact email	mstrous@ucalgary.ca
lab head
AngelaKouris
contact affiliation	University of Calgary
contact email	angela.kouris@ucalgary.ca
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD028583

PRIDE project URI

• PRIDE
  1. PXD028583
     1. Label: PRIDE project
     2. Name: Frequency of change determines effectiveness of microbial response strategies in sulfidic stream microbiomes