PXD028562

PXD028562 is an original dataset announced via ProteomeXchange.

Title	LC-MS/MS Analysis of Respiratory Viruses
Description	Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and other respiratory viruses -Coronavirus OC43, Coronavirus 229E, Influenza A/H1N1, Influenza A/H3N2, Influenza B, Respiratory Syncytial Virus RSV A and RSV B - were analysed by bottom-up proteomics of viral cultures. High coverage of viral proteins was acheived after culturing in serum-free conditions when compared to cultures grown using standard conditions including 2% fetal bovine serum.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_07:09:27.345.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD028562
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Christopher Hodgkins
SpeciesList	scientific name: Human coronavirus 229E; NCBI TaxID: 11137; scientific name: Influenza A virus (A/swine/QC/440-A/2009(H3N2)); NCBI TaxID: 940825; scientific name: Human coronavirus OC43; NCBI TaxID: 31631; scientific name: Influenza B virus (B/Victoria/500/2014); NCBI TaxID: 1757312; scientific name: Bos taurus (Bovine); NCBI TaxID: 9913; scientific name: Influenza A virus (A/swine/QC/705-A/2009(H1N1)); NCBI TaxID: 1000364; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Human respiratory syncytial virus B; NCBI TaxID: 208895; scientific name: Human respiratory syncytial virus A; NCBI TaxID: 208893; scientific name: Severe acute respiratory syndrome coronavirus 2; NCBI TaxID: 2697049; scientific name: Chlorocebus sabaeus; NCBI TaxID: 60711;
ModificationList	monohydroxylated residue; iodoacetic acid derivatized residue; deamidated residue
Instrument	TripleTOF 6600

Revision	Datetime	Status	ChangeLog Entry
0	2021-09-16 07:40:23	ID requested
1	2022-10-13 14:03:11	announced
⏵ 2	2023-11-14 07:09:35	announced	2023-11-14: Updated project metadata.

10.6019/PXD028562;

Hodgkins C, Buckton LK, Walker GJ, Crossett B, Cordwell SJ, Horvath AR, Rawlinson WD, Simultaneous monitoring of eight human respiratory viruses including SARS-CoV-2 using liquid chromatography-tandem mass spectrometry. Sci Rep, 12(1):13392(2022) [pubmed]

submitter keyword: SARS-CoV-2, Culture, LC-MS/MS

William D. Rawlinson
contact affiliation	1.NSW Health Pathology, Randwick, New South Wales, 2031, Australia 2. Virology Research Laboratory, SAViD, Prince of Wales Hospital, Randwick, New South Wales, 2031, Australia 3. Schools of Medical Sciences, Women’s and Children’s Health, Faculty of Medicine and BABS Faculty of Science, University of New South Wales, Sydney, New South Wales, 2052, Australia 4. Serology and Virology Division (SAViD), NSW Health Pathology, Randwick, New South Wales, 2031, Australia
contact email	w.rawlinson@unsw.edu.au
lab head
Christopher Hodgkins
contact affiliation	NSW Health Pathology
contact email	christopher.hodgkins@health.nsw.gov.au
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD028562

PRIDE project URI

• PRIDE
  1. PXD028562
     1. Label: PRIDE project
     2. Name: LC-MS/MS Analysis of Respiratory Viruses