PXD028510

PXD028510 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	The human proteome project, C-HPP 18 chromosome project
Description	The Russian part of C-HPP is aimed to identify proteins encoded by the 18 human chromosome. In this project, 3 liver tissue samples were studied by standart SRM and 2 dimensional liquid chromatography approach to enhance the sensitivity of the MS method. The total amount of proteins found in samples encoded by the 18 human chromosome is 118. UPS1 used as calibration and to measure the sensitivity of SRM method.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:36:23.504.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Nikita Vavilov
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	6495A Triple Quadrupole LC/MS

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-09-16 02:35:30	ID requested
1	2022-05-19 10:14:47	announced
⏵ 2	2024-10-22 05:36:24	announced	2024-10-22: Updated project metadata.

Publication List

10.1016/j.dib.2022.108055;
Vavilov NE, Ilgisonis EV, Lisitsa AV, Ponomarenko EA, Farafonova TE, Tikhonova OV, Zgoda VG, Archakov AI, Deep proteomic dataset of human liver samples obtained by two-dimensional sample fractionation coupled with tandem mass spectrometry. Data Brief, 42():108055(2022) [pubmed]

10.1016/j.dib.2022.108055;

Vavilov NE, Ilgisonis EV, Lisitsa AV, Ponomarenko EA, Farafonova TE, Tikhonova OV, Zgoda VG, Archakov AI, Deep proteomic dataset of human liver samples obtained by two-dimensional sample fractionation coupled with tandem mass spectrometry. Data Brief, 42():108055(2022) [pubmed]

Keyword List

submitter keyword: SRM, UPS1, chromosome 18,Liver, MRM, C-HPP 18

submitter keyword: SRM, UPS1, chromosome 18,Liver, MRM, C-HPP 18

Contact List

Victor G. Zgoda
contact affiliation	Department of mass spectrometry and proteomics, IBMC, Russia
contact email	victor.zgoda@gmail.com
lab head
Nikita Vavilov
contact affiliation	IBMC (Institute of Biomedical Chemistry)
contact email	n.vavilov95@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD028510
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD028510

PRIDE project URI

Repository Record List

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