PXD028392
PXD028392 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Multiomics Profiling of Alzheimer’s Disease Serum for the Identification of Autoantibody Biomarkers |
Description | New biomarkers of Alzheimer’s Disease (AD) with diagnostic value in preclinical and prodromal stages are urgently needed. AD-related serum autoantibodies are potential candidate biomarkers. Here, we aimed at identifying AD-related serum autoantibodies using protein microarrays and mass spectrometry-based methods. To this end, an untargeted complementary screening using high-density (42,100 antigens) and low-density (384 antigens) planar protein-epitope signature tag (PrEST) arrays and an immunoprecipitation protocol coupled to mass spectrometry analysis were used for serum autoantibody profiling. From the untargeted screening phase, 377 antigens corresponding to 338 proteins were selected for validation. Out of them, IVD, CYFIP1 and ADD2 seroreactivity was validated using 128 sera from AD patients and controls by PrEST-suspension beads arrays, and ELISA or luminescence Halotag-based bead immunoassay using full-length recombinant proteins. Importantly, IVD, CYFIP1, and ADD2 showed in combination noticeable AD diagnostic ability. Moreover, IVD protein abundance in the prefrontal cortex was significantly two-fold higher in AD patients than in controls by WB and immunohistochemistry, whereas CYFIP1 and ADD2 were significantly down-regulated in AD patients. The panel of AD-related autoantigens identified by a comprehensive multiomics approach may provide new insights of the disease and should help in the blood-based diagnosis of Alzheimer’s disease. |
HostingRepository | PRIDE |
AnnounceDate | 2021-12-30 |
AnnouncementXML | Submission_2021-12-30_14:06:46.651.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Rodrigo Barderas |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | phosphorylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2021-09-09 08:35:10 | ID requested | |
⏵ 1 | 2021-12-30 14:06:47 | announced |
Publication List
San Segundo-Acosta P, Montero-Calle A, Jernbom-Falk A, Alonso-Navarro M, Pin E, Andersson E, Hellstr, ö, m C, S, á, nchez-Mart, í, nez M, R, á, bano A, Sol, í, s-Fern, á, ndez G, Pel, á, ez-Garc, í, a A, Mart, í, nez-Useros J, Fern, á, ndez-Ace, ñ, ero MJ, M, å, nberg A, Nilsson P, Barderas R, Multiomics Profiling of Alzheimer's Disease Serum for the Identification of Autoantibody Biomarkers. J Proteome Res, 20(11):5115-5130(2021) [pubmed] |
Keyword List
submitter keyword: autoantibodies, autoantigens, Alzheimer's disease, protein microarrays, mass spectrometry, PrEST microarrays |
Contact List
Rodrigo Barderas | |
---|---|
contact affiliation | Functional Proteomics Unit Chronic Disease Programme Instituto de Salud Carlos III |
contact email | r.barderasm@isciii.es |
lab head | |
Rodrigo Barderas | |
contact affiliation | Instituto de Salud Carlos III |
contact email | r.barderasm@isciii.es |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/12/PXD028392 |
PRIDE project URI |
Repository Record List
[ + ]