PXD028049

PXD028049 is an original dataset announced via ProteomeXchange.

Title	Unravelling the layering of microbial community, proteins and chemical structure in aerobic granules
Description	Nearly all bacteria live in microbial assemblages such as biofilms and granules with a continuum of chemical gradients. Each of these layers provide a niche selective for specific bacteria and functions. A gentle extraction approach based on a cation exchange resin and defined shear was employed to collect single layers in microbial granules for microbial and chemical analysis. The use of an existing cation-exchange resin for gradual biomass disintegration, combined with NGS and proteome analysis have revealed a promising approach for investigating the identity and functions in multilayered biofilm structures.
HostingRepository	PRIDE
AnnounceDate	2022-05-17
AnnouncementXML	Submission_2022-05-17_05:06:04.601.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD028049
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Jan Struckmann Poulsen
SpeciesList	scientific name: sludge granule bacterium 1; NCBI TaxID: 435623;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-08-20 07:34:10	ID requested
⏵ 1	2022-05-17 05:06:04	announced

Dataset with its publication pending

submitter keyword: Aerobic granular sludge, granule structure, EPS, FTIR, microbial community, metaproteomics

Jeppe Lund Nielsen
contact affiliation	Aalborg University, Department of Chemistry and Bioscience, Fredrik Bajers Vej 7H, 9220 Aalborg, Denmark
contact email	jln@bio.aau.dk
lab head
Jan Struckmann Poulsen
contact affiliation	Aalborg University
contact email	jsp@bio.aau.dk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/03/PXD028049

PRIDE project URI

• PRIDE
  1. PXD028049
     1. Label: PRIDE project
     2. Name: Unravelling the layering of microbial community, proteins and chemical structure in aerobic granules