PXD027871

PXD027871 is an original dataset announced via ProteomeXchange.

Title	Differential bottom-up proteomics of truffles
Description	To compare truffles on protein level, samples of different truffle species (T. magnatum, T. indicum, T. melanosporum, T. aestivum and T. albidum Pico) were analysed by a LC-MS/MS based shotgun proteomics approach. First, different established bottom-up proteomics sample preparation approaches for in solution tryptic proteolysis were tested for a truffle sample. Then, a spectral library was generated by 2D LC-MS/MS and truffle samples were measured in data-independent acquisition (DIA) mode. We provide a comprehensive study on the proteomic differences between truffle species.
HostingRepository	PRIDE
AnnounceDate	2021-12-19
AnnouncementXML	Submission_2021-12-18_23:35:43.079.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Dennis Krösser
SpeciesList	scientific name: Tuber melanosporum Mel28; NCBI TaxID: 656061; scientific name: Tuber aestivum; NCBI TaxID: 59557; scientific name: Tuber albidum; NCBI TaxID: 302004; scientific name: Tuber indicum; NCBI TaxID: 55307; scientific name: Tuber magnatum; NCBI TaxID: 42249;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2021-08-11 08:22:03	ID requested
⏵ 1	2021-12-18 23:35:43	announced

Kr, ö, sser D, Dreyer B, Siebels B, Vo, ß H, Krisp C, Schl, ü, ter H, . Int J Mol Sci, 22(23):(2021) [pubmed]

submitter keyword: Truffles, LC-MS, DIA

Hartmut Schlüter
contact affiliation	University Medical Center Hamburg-Eppendorf Institute of Clinical Chemistry Section Mass Spectrometric Proteomics
contact email	hschluet@uke.de
lab head
Dennis Krösser
contact affiliation	University Medical Center Hamburg-Eppendorf
contact email	d.kroesser@uke.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/12/PXD027871

PRIDE project URI

• PRIDE
  1. PXD027871
     1. Label: PRIDE project
     2. Name: Differential bottom-up proteomics of truffles