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PXD027788

PXD027788 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleOptimization of a Sample Preparation Workflow for Proteomics Analysis of the Mouse Feces
DescriptionWe evaluated different protein different extraction protocols (using different lysis buffers) and contaminant removal strategies during bottom-up proteomics analysis of mouse feces to maximize quantitative reproducibility and the number of identified proteins.
HostingRepositoryPRIDE
AnnounceDate2022-08-22
AnnouncementXMLSubmission_2022-08-22_03:02:29.346.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMaryam Baniasad
SpeciesList scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
InstrumenttimsTOF Pro
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-08-06 03:45:53ID requested
12022-08-22 03:02:30announced
Publication List
Baniasad M, Kim Y, Shaffer M, Sabag-Daigle A, Leleiwi I, Daly RA, Ahmer BMM, Wrighton KC, Wysocki VH, Optimization of proteomics sample preparation for identification of host and bacterial proteins in mouse feces. Anal Bioanal Chem, 414(7):2317-2331(2022) [pubmed]
Keyword List
submitter keyword: Optimization, Sample Preparation, Bottom-up Proteomics, Lysis buffer, Filtration method
Contact List
Vicki Wysocki
contact affiliationThe Ohio State University
contact emailWysocki.11@osu.edu
lab head
Maryam Baniasad
contact affiliationDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA
contact emailbaniasad.1@buckeyemail.osu.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
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