PXD027788 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Optimization of a Sample Preparation Workflow for Proteomics Analysis of the Mouse Feces |
Description | We evaluated different protein different extraction protocols (using different lysis buffers) and contaminant removal strategies during bottom-up proteomics analysis of mouse feces to maximize quantitative reproducibility and the number of identified proteins. |
HostingRepository | PRIDE |
AnnounceDate | 2022-08-22 |
AnnouncementXML | Submission_2022-08-22_03:02:29.346.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Maryam Baniasad |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue |
Instrument | timsTOF Pro |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-08-06 03:45:53 | ID requested | |
⏵ 1 | 2022-08-22 03:02:30 | announced | |
Publication List
Baniasad M, Kim Y, Shaffer M, Sabag-Daigle A, Leleiwi I, Daly RA, Ahmer BMM, Wrighton KC, Wysocki VH, Optimization of proteomics sample preparation for identification of host and bacterial proteins in mouse feces. Anal Bioanal Chem, 414(7):2317-2331(2022) [pubmed] |
Keyword List
submitter keyword: Optimization, Sample Preparation, Bottom-up Proteomics, Lysis buffer, Filtration method |
Contact List
Vicki Wysocki |
contact affiliation | The Ohio State University |
contact email | Wysocki.11@osu.edu |
lab head | |
Maryam Baniasad |
contact affiliation | Department of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210, USA |
contact email | baniasad.1@buckeyemail.osu.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD027788 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD027788
- Label: PRIDE project
- Name: Optimization of a Sample Preparation Workflow for Proteomics Analysis of the Mouse Feces