PXD027339

PXD027339 is an original dataset announced via ProteomeXchange.

Title	Proteomic profiling of glioblastoma stem cells - HGCC cohort
Description	With HiRIEF LC-MS/MS, we analysed 11 GBM stem cell lines from the HGCC cohort (Uppsala, Sweden). The samples were run in one TMT16 set, with three samples analysed in duplicates, and the last two channels left empty.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_07:30:35.210.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Haris Babačić
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-07-15 09:29:51	ID requested
1	2022-12-23 07:47:38	announced
⏵ 2	2023-11-14 07:30:36	announced	2023-11-14: Updated project metadata.

Baba, č, i, ć H, Galardi S, Umer HM, Hellstr, ö, m M, Uhrbom L, Maturi N, Cardinali D, Pellegatta S, Michienzi A, Trevisi G, Mangiola A, Lehti, ö J, Ciafr, è SA, Pernemalm M, Glioblastoma stem cells express non-canonical proteins and exclusive mesenchymal-like or non-mesenchymal-like protein signatures. Mol Oncol, 17(2):238-260(2023) [pubmed]

submitter keyword: glioblastoma, stem cells, HiRIEF, brain cancer, cell line, LC-MS/MS

Janne Lehtiö
contact affiliation	Department of Oncology and Pathology, Science for Life Laboratory, Karolinska Institute, Stockholm, Sweden
contact email	janne.lehtio@ki.se
lab head
Haris Babačić
contact affiliation	1. Department of Oncology-Pathology, Karolinska Institute, Stockholm; 2. Proteogenomics Facility, Science for Life Laboratory
contact email	haris.babacic@ki.se
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/12/PXD027339

PRIDE project URI

• PRIDE
  1. PXD027339
     1. Label: PRIDE project
     2. Name: Proteomic profiling of glioblastoma stem cells - HGCC cohort