PXD027061

PXD027061 is an original dataset announced via ProteomeXchange.

Title	Identification of candidate genes that specifically regulate subcutaneous and intramuscular fat deposition from transcriptomic and proteomic profiles in Dingyuan pigs
Description	we collected tissues of subcutaneous fat and longissimus dorsi (LD) muscle from individuals that have divergent of backfat thickness and intramuscular fat content, and have similar age and body weight. The transcriptomic and proteomic data were gained using RNA-Seq and TMT to identify the key genes and pathways that specifically regulate the subcutaneous fat and intramuscular fat deposition in Dingyuan pig.
HostingRepository	PRIDE
AnnounceDate	2022-05-25
AnnouncementXML	Submission_2022-05-25_09:29:43.109.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	pan zhang
SpeciesList	scientific name: Sus scrofa domesticus (domestic pig); NCBI TaxID: 9825;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2021-07-02 08:23:45	ID requested
⏵ 1	2022-05-25 09:29:43	announced

Zhang P, Li Q, Wu Y, Zhang Y, Zhang B, Zhang H, Identification of candidate genes that specifically regulate subcutaneous and intramuscular fat deposition using transcriptomic and proteomic profiles in Dingyuan pigs. Sci Rep, 12(1):2844(2022) [pubmed]

ProteomeXchange project tag: Skeletal Muscle Proteome (B/D-HPP), Human Proteome Project

submitter keyword: TMT

pig

Subcutaneous fat

Intramuscular fat

Hao Zhang
contact affiliation	National Engineering Laboratory for Animal Breeding, China Agricultural University,No. 2 Yuanmingyuan West Rd., Beijing 100193, China
contact email	zhanghao827@163.com
lab head
pan zhang
contact affiliation	zhangoan95@163.com
contact email	zhangpan95@163.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/04/PXD027061

PRIDE project URI

• PRIDE
  1. PXD027061
     1. Label: PRIDE project
     2. Name: Identification of candidate genes that specifically regulate subcutaneous and intramuscular fat deposition from transcriptomic and proteomic profiles in Dingyuan pigs