PXD026936

PXD026936 is an original dataset announced via ProteomeXchange.

Title	Analysis of human brain tissue derived from DBS surgery
Description	The implantation of deep brain stimulation (DBS) electrodes into the human brain is a neurosurgical treatment for, e.g., movement disorders. We describe a novel approach to collecting brain tissue from DBS surgery-guiding instruments for liquid chromatography-mass spectrometry and RNA sequencing analyses. Proteomics and transcriptomics showed that the approach is useful for obtaining disease-specific expression data. A comparison between our improved and the previous approaches and related datasets was performed. BioStudies:https://www.ebi.ac.uk/biostudies/studies/S-BSST667 and Publication: https://www.biorxiv.org/content/10.1101/2021.06.18.448926v1
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:23:27.696.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jaakko Teppo
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2021-06-25 03:58:17	ID requested
1	2021-06-29 08:54:17	announced
2	2021-06-29 21:06:02	announced	2021-06-30: Updated project metadata.
⏵ 3	2024-10-22 05:23:28	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: Human, brain, deep brain stimulation

Markku Varjosalo
contact affiliation	Institute of Biotechnology, Helsinki Institute of Life Science, Systems Biology/Pathology Research Group, University of Helsinki, Finland
contact email	markku.varjosalo@helsinki.fi
lab head
Jaakko Teppo
contact affiliation	University of Helsinki
contact email	jaakko.teppo@helsinki.fi
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD026936

PRIDE project URI

• PRIDE
  1. PXD026936
     1. Label: PRIDE project
     2. Name: Analysis of human brain tissue derived from DBS surgery