PXD026838

PXD026838 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Illuminating the metabolic activities of deep-sea microbes and their functional adaptation to the harsh nutritional conditions with metaproteomics
Description	In the present study, we studied microbial composition and metabolic activity in the bathypelagic zone of the South China Sea. 12 samples were collected and subjected to metaproteomic analysis. Our data provide a novel view of the roles of two lifestyle prokaryotes and their link in substrate utilization in dark ocean.
HostingRepository	PRIDE
AnnounceDate	2024-06-16
AnnouncementXML	Submission_2024-06-15_23:59:15.083.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	keqiang yan
SpeciesList	scientific name: phytoplankton environmental sample; NCBI TaxID: 1249885;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-06-21 03:10:51	ID requested
⏵ 1	2024-06-15 23:59:15	announced

Publication List

10.1126/sciadv.adj8184;
Chen S, Xie ZX, Yan KQ, Chen JW, Li DX, Wu PF, Peng L, Lin L, Dong CM, Zhao Z, Fan GY, Liu SQ, Herndl GJ, Wang DZ, Functional vertical connectivity of microbial communities in the ocean. Sci Adv, 10(21):eadj8184(2024) [pubmed]

10.1126/sciadv.adj8184;

Chen S, Xie ZX, Yan KQ, Chen JW, Li DX, Wu PF, Peng L, Lin L, Dong CM, Zhao Z, Fan GY, Liu SQ, Herndl GJ, Wang DZ, Functional vertical connectivity of microbial communities in the ocean. Sci Adv, 10(21):eadj8184(2024) [pubmed]

Keyword List

submitter keyword: metaproteomics

submitter keyword: metaproteomics

Contact List

Dazhi Wang
contact affiliation	Xiamen University (lab head)
contact email	dzwang@xmu.edu.cn
lab head
keqiang yan
contact affiliation	BGI
contact email	yankeqiang@genomics.cn
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/06/PXD026838
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/06/PXD026838

PRIDE project URI

Repository Record List

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