PXD026819

PXD026819 is an original dataset announced via ProteomeXchange.

Title	lgG4 lesion of EoE patient biopsy by AutoSTOMP
Description	To test the ability of the Automated Spatially Targeted Optical Micro Proteomics (AutoSTOMP) protocol for clinical research. We collected from a patient diagnosed with active EoE (≥15 eosinophils/hpf), according to consensus guidelines, using standard endoscopy procedures, then we try to selectively obtain the proteome from the discrete lgG4+ lesions of the biopsy sections by AutoSTOMP, and try to link the lesion structure with its specially skewed constituents comparing to the rest of the tissue.
HostingRepository	PRIDE
AnnounceDate	2021-08-10
AnnouncementXML	Submission_2021-09-15_23:31:28.052.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	BOCHENG YIN
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	biotinylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-06-20 22:45:03	ID requested
1	2021-08-10 07:53:48	announced
⏵ 2	2021-09-15 23:31:28	announced	2021-09-16: Updated publication reference for PubMed record(s): 34436902.

Yin B, Caggiano LR, Li RC, McGowan E, Holmes JW, Ewald SE, . J Proteome Res, 20(9):4543-4552(2021) [pubmed]

submitter keyword: EoE, lgG4, autoSTOMP

Sarah E. Ewald
contact affiliation	University of Virginia
contact email	se2s@virginia.edu
lab head
BOCHENG YIN
contact affiliation	University of Virginia
contact email	yincool2008@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/08/PXD026819

PRIDE project URI

• PRIDE
  1. PXD026819
     1. Label: PRIDE project
     2. Name: lgG4 lesion of EoE patient biopsy by AutoSTOMP