PXD026798

PXD026798 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Strategies for the interpretation of soil metaproteomic data
Description	Evaluation of different strategies to interpret metaproteomics data acquired on soil samples from a floodplain along the Seine River (France) incorporating sample-specific metagenomics data, soil genome catalogue database, and generic sequence database.
HostingRepository	PRIDE
AnnounceDate	2022-02-17
AnnouncementXML	Submission_2022-02-17_04:41:59.647.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD026798
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Jean ARMENGAUD
SpeciesList	scientific name: Archaea; NCBI TaxID: 2157; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Bacteria; NCBI TaxID: 2;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-06-18 03:52:49	ID requested
⏵ 1	2022-02-17 04:42:00	announced

Publication List

Jouffret V, Miotello G, Culotta K, Ayrault S, Pible O, Armengaud J, Increasing the power of interpretation for soil metaproteomics data. Microbiome, 9(1):195(2021) [pubmed]

Jouffret V, Miotello G, Culotta K, Ayrault S, Pible O, Armengaud J, Increasing the power of interpretation for soil metaproteomics data. Microbiome, 9(1):195(2021) [pubmed]

Keyword List

submitter keyword: metaproteomics, bioinformatics, sediment, metagenomics, mags, soil

submitter keyword: metaproteomics, bioinformatics, sediment, metagenomics, mags, soil

Contact List

Jean Armengaud
contact affiliation	CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France
contact email	jean.armengaud@cea.fr
lab head
Jean ARMENGAUD
contact affiliation	Li2D
contact email	jean.armengaud@cea.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD026798
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD026798

PRIDE project URI

Repository Record List

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