PXD026798 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Strategies for the interpretation of soil metaproteomic data |
Description | Evaluation of different strategies to interpret metaproteomics data acquired on soil samples from a floodplain along the Seine River (France) incorporating sample-specific metagenomics data, soil genome catalogue database, and generic sequence database. |
HostingRepository | PRIDE |
AnnounceDate | 2022-02-17 |
AnnouncementXML | Submission_2022-02-17_04:41:59.647.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD026798 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Jean ARMENGAUD |
SpeciesList | scientific name: Archaea; NCBI TaxID: 2157; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Bacteria; NCBI TaxID: 2; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-06-18 03:52:49 | ID requested | |
⏵ 1 | 2022-02-17 04:42:00 | announced | |
Publication List
Jouffret V, Miotello G, Culotta K, Ayrault S, Pible O, Armengaud J, Increasing the power of interpretation for soil metaproteomics data. Microbiome, 9(1):195(2021) [pubmed] |
Keyword List
submitter keyword: metaproteomics, bioinformatics, sediment, metagenomics, mags, soil |
Contact List
Jean Armengaud |
contact affiliation | CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France |
contact email | jean.armengaud@cea.fr |
lab head | |
Jean ARMENGAUD |
contact affiliation | Li2D |
contact email | jean.armengaud@cea.fr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD026798 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD026798
- Label: PRIDE project
- Name: Strategies for the interpretation of soil metaproteomic data