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PXD026798

PXD026798 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleStrategies for the interpretation of soil metaproteomic data
DescriptionEvaluation of different strategies to interpret metaproteomics data acquired on soil samples from a floodplain along the Seine River (France) incorporating sample-specific metagenomics data, soil genome catalogue database, and generic sequence database.
HostingRepositoryPRIDE
AnnounceDate2022-02-17
AnnouncementXMLSubmission_2022-02-17_04:41:59.647.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD026798
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterJean ARMENGAUD
SpeciesList scientific name: Archaea; NCBI TaxID: 2157; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Bacteria; NCBI TaxID: 2;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-06-18 03:52:49ID requested
12022-02-17 04:42:00announced
Publication List
Jouffret V, Miotello G, Culotta K, Ayrault S, Pible O, Armengaud J, Increasing the power of interpretation for soil metaproteomics data. Microbiome, 9(1):195(2021) [pubmed]
Keyword List
submitter keyword: metaproteomics, bioinformatics, sediment, metagenomics, mags, soil
Contact List
Jean Armengaud
contact affiliationCEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France
contact emailjean.armengaud@cea.fr
lab head
Jean ARMENGAUD
contact affiliationLi2D
contact emailjean.armengaud@cea.fr
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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