PXD026639

PXD026639 is an original dataset announced via ProteomeXchange.

Title	Dynamic maps of protein-protein-metabolite complexes in S. cerevisiae
Description	The project aims to create dynamic maps of protein-protein-metabolite complexes in S. cerevisiae across growth phases using PROMIS (PROtein–Metabolite Interactions using Size separation). It is a biochemical, untargeted, proteome- and metabolome-wide method to study protein-protein and protein–metabolite complexes close to in vivo conditions. Approach involves using size exclusion chromatography (SEC) to separate complexes, followed by LC-MS-based proteomics and metabolomics analysis. This dataset was used for mashie learning approach: SLIMP, supervised learning of metabolite-protein interactions from multiple co-fractionation mass spectrometry datasets, to compute a global map of metabolite-protein interactions.
HostingRepository	PRIDE
AnnounceDate	2022-10-25
AnnouncementXML	Submission_2022-10-25_08:57:09.005.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	EwelinaSokolowska
SpeciesList	scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-06-10 23:24:00	ID requested
⏵ 1	2022-10-25 08:57:09	announced

Dataset with its publication pending

submitter keyword: protein-metabolite complexes, ligand,protein-protein complexes

AleksandraSkirycz
contact affiliation	Max-Planck-Institut für Molekulare Pflanzenphysiologie
contact email	skirycz@mpimp-golm.mpg.de
lab head
EwelinaSokolowska
contact affiliation	Max Planck Institute of Molecular Plant Physiology Wissenschaftspark Am Mühlenberg 1 14476 Potsdam-Golm
contact email	esokolowska@mpimp-golm.mpg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD026639

PRIDE project URI

• PRIDE
  1. PXD026639
     1. Label: PRIDE project
     2. Name: Dynamic maps of protein-protein-metabolite complexes in S. cerevisiae