PXD026597 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | iTRAQ analyses of Fe-sufficient and Fe-deficient non-transformant and HRZ-knockdown rice roots |
Description | We conducted iTRAQ analyses using soluble proteins extracted from roots of non-transformant rice (NT) and previously generated HRZ-knockdown (HRZi) lines (Kobayashi et al., 2013 Nat Commun 4: 2792) cultivated under Fe-sufficient and Fe-deficient conditions. We identified and quantified 3,033 and 3,525 proteins in replicate 1 and 2, respectively, which totaled 4,884 proteins including 1,698 overlapping proteins between the two replicate experiments. |
HostingRepository | PRIDE |
AnnounceDate | 2022-04-08 |
AnnouncementXML | Submission_2022-04-07_17:56:52.146.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Takanori Kobayashi |
SpeciesList | scientific name: Oryza sativa (Rice); NCBI TaxID: 4530; |
ModificationList | iTRAQ4plex-116 reporter+balance reagent acylated residue |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-06-09 05:36:22 | ID requested | |
⏵ 1 | 2022-04-07 17:56:52 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: HRZ ubiquitin ligases, iron deficiency, rice roots |
Contact List
Takanori Kobayashi |
contact affiliation | Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, 1-308 Suematsu, Nonoichi, Ishikawa 921-8836, JAPAN |
contact email | abkoba@ishikawa-pu.ac.jp |
lab head | |
Takanori Kobayashi |
contact affiliation | Ishikawa Prefectural University |
contact email | abkoba@ishikawa-pu.ac.jp |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD026597
- Label: PRIDE project
- Name: iTRAQ analyses of Fe-sufficient and Fe-deficient non-transformant and HRZ-knockdown rice roots