PXD026550

PXD026550 is an original dataset announced via ProteomeXchange.

Title	GFAP and MBP peptides in Traumatic Brain Injury
Description	Glial fibrillary acidic protein (GFAP) is the major intermediate filament III protein of astroglia cells and is upregulated in astrogliosis following traumatic brain injury (TBI). Here we reported that GFAP is truncated at both the C- and N-terminals by cytosolic protease calpain to GFAP breakdown products (GBDP) of 46-40 kDa then 38 kDa following pro-necrotic (A23187) and pro-apoptotic (staurosporine) challenges to primary cultured astroglia or neuron-glia mixed cells. In addition, with another pro-apoptotic challenge (EDTA) where caspases are activated but not calpain, GFAP was fragmented internally, generating C-terminal GBDP of 20 kDa. Following controlled cortical impact in mice, GBDP of 46-40K and 38K were formed at day 3 to 28 post-injury. Purified GFAP protein treated with calpain-1 and -2 revealed that they produce (i) major N-terminal cleavage site between A-56 and A-75, and (ii) major C-terminal cleavage sites between T-383 and Q-388, producing a limit fragment of 38K and concurrently releasing several small GFAP peptides. Caspase-6 treated GFAP was cleaved at D-78, R-79, D-266 and A-267, where GFAP was relatively resistant to caspase-3. We also derived a GBDP-38K N-terminal specific antibody which only labels injured astroglia cell body in both cultured astroglia and in mouse cortex and hippocampus after TBI. Lastly as clinical translation, we observed that CSF samples collected from severe human TBI have elevated levels of calpain-generated GBDP-38K. Thus by examining the various forms of GFAP breakdown products as biomarkers, one can gain mechanistic insights of tracking astroglia injury under conditions where calpain and/or caspase-6 are activated.
HostingRepository	PanoramaPublic
AnnounceDate	2022-07-18
AnnouncementXML	Submission_2022-07-18_14:48:20.112.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	William Haskins
SpeciesList	scientific name: Homo sapiens; NCBI TaxID: 9606;
ModificationList	Label:13C(6)15N(1); Label:13C(5)15N(1); Label:13C(9)15N(1)
Instrument	TSQ Altis

Revision	Datetime	Status	ChangeLog Entry
0	2021-06-07 10:13:49	ID requested
⏵ 1	2022-07-18 14:48:21	announced

Sarkis GA, Lees-Gayed N, Banoub J, Abbatielo SE, Robertson C, Haskins WE, Yost RA, Wang KKW, Generation and Release of Neurogranin, Vimentin, and MBP Proteolytic Peptides, Following Traumatic Brain Injury. Mol Neurobiol, 59(2):731-747(2022) [pubmed]

submitter keyword: GFAP MBP

William E. Haskins
contact affiliation	Gryphon Bio, Inc.
contact email	will@gryphonbio.com
lab head
William Haskins
contact affiliation	Gryphon Bio
contact email	will@gryphonbio.com
dataset submitter

Panorama Public dataset URI