PXD026496

PXD026496 is an original dataset announced via ProteomeXchange.

Title	Silica associated proteomes of three diatoms reveal conservation of sequence motifs, proteins highly conserved among diatoms, and proteins targeted to specific silica structures
Description	Proteins associated with diatom silica are likely involved in the biogenesis of the complex, species-specific morphologies of the biomineral, but only very few such proteins have been identified. In this project we extracted and identified proteins from three related, but morphologically distinct, species of centric diatoms: Thalassiosira pseudonana, Thalassiosira oceanica and Cyclotella cryptica.
HostingRepository	PRIDE
AnnounceDate	2022-05-30
AnnouncementXML	Submission_2022-05-30_11:54:27.399.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Marc Gentzel
SpeciesList	scientific name: Thalassiosira pseudonana CCMP1335; NCBI TaxID: 296543; scientific name: Thalassiosira cf. oceanica; NCBI TaxID: 421932; scientific name: Cyclotella cryptica; NCBI TaxID: 29204;
ModificationList	L-methionine sulfone; mono N-acetylated residue
Instrument	Q Exactive HF; LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2021-06-04 09:37:36	ID requested
⏵ 1	2022-05-30 11:54:27	announced

Dataset with its publication pending

submitter keyword: Cell wall, proteomics, morphogenesis, silaffin, fultoportula, valve, girdle band, intrinsically disordered proteins, biomineralization

Nils Kröger
contact affiliation	B Cube, TU Dresden, Germany
contact email	nils.kroeger@tu-dresden.de
lab head
Marc Gentzel
contact affiliation	Molecular Analysis - Mass Spectrometry, Center for Molecular and Cellular Bioengineering (CMCB), TU Dresden
contact email	marc.gentzel@tu-dresden.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD026496

PRIDE project URI

• PRIDE
  1. PXD026496
     1. Label: PRIDE project
     2. Name: Silica associated proteomes of three diatoms reveal conservation of sequence motifs, proteins highly conserved among diatoms, and proteins targeted to specific silica structures