PXD026087

PXD026087 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	timsTOF Pro datasets for CCS prediction with Mascot-Percolator.
Description	Tryptic digested E. coli dataset fractionated by SCX stagetip and applied to test the CCS prediction model. The Peaklist from the MS/MS spectra as mascot generic format (MGF) was created by compass DataAnalysis 5.2.216.271.5315. Protein and peptides were identified by by Mascot-Percolator.
HostingRepository	jPOST
AnnounceDate	2021-09-06
AnnouncementXML	Submission_2022-09-18_02:24:02.740.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Chih-Hsiang Chang
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	S-carboxamidomethyl-L-cysteine; alpha-amino acetylated residue; L-methionine sulfoxide
Instrument	timsTOF Pro

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-05-19 05:45:53	ID requested
1	2021-09-06 06:13:09	announced
⏵ 2	2022-09-18 02:24:03	announced	2022-09-18: Updated FTP location.

Publication List

Chang CH, Yeung D, Spicer V, Ogata K, Krokhin O, Ishihama Y, Sequence-Specific Model for Predicting Peptide Collision Cross Section Values in Proteomic Ion Mobility Spectrometry. J Proteome Res, ():(2021) [pubmed]

Chang CH, Yeung D, Spicer V, Ogata K, Krokhin O, Ishihama Y, Sequence-Specific Model for Predicting Peptide Collision Cross Section Values in Proteomic Ion Mobility Spectrometry. J Proteome Res, ():(2021) [pubmed]

Keyword List

submitter keyword: IMS, e. coli, CCS

submitter keyword: IMS, e. coli, CCS

Contact List

Yasushi Ishihama
lab head
Chih-Hsiang Chang
contact affiliation	Kumamoto university
dataset submitter

Full Dataset Link List

jPOST dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001176/

jPOST dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST001176/