⮝ Full datasets listing

PXD026056

PXD026056 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleInvestigation of xylan degradation in Thermococcus sp. 2319x1E
DescriptionThermococcus sp. 2319x1E is able to grow on different mono- or polysaccharides as carbon source, including xylan. To investigate xylan degradation in Thermococcus sp. 2319x1E, cells were grown on 4 different carbon sources for 12 h (mid-exponential phase) and harvested by centrifugation. Using a label-free quantification approach the whole proteomes were analyzed. In another experiment a glycosidase specific activity-based probe (JJB384) was used to isolate specific Thermococcus glycosidases activated during growth on xylan or xylose.
HostingRepositoryPRIDE
AnnounceDate2022-02-17
AnnouncementXMLSubmission_2022-02-17_03:40:42.488.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterFarnusch Kaschani
SpeciesList scientific name: unclassified Thermococcus; NCBI TaxID: 2627626;
ModificationListmonohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
InstrumentOrbitrap Fusion Lumos; LTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-05-17 08:19:12ID requested
12022-02-17 03:40:43announced
Publication List
Klaus T, Ninck S, Albersmeier A, Busche T, Wibberg D, Jiang J, Elcheninov AG, Zayulina KS, Kaschani F, Br, ä, sen C, Overkleeft HS, Kalinowski J, Kublanov IV, Kaiser M, Siebers B, sp. Strain 2319x1E. Front Microbiol, 12():734039(2021) [pubmed]
Keyword List
submitter keyword: Thermococcus sp 2319x1E, ABPP, fluorophosphonate, FP
Contact List
Farnusch Kaschani
contact affiliationAnalytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
contact emailfarnusch.kaschani@uni-due.de
lab head
Farnusch Kaschani
contact affiliationUniversity Duisburg-Essen
contact emailfarnusch.kaschani@uni-due.de
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD026056
PRIDE project URI
Repository Record List
[ + ]