PXD026056 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Investigation of xylan degradation in Thermococcus sp. 2319x1E |
Description | Thermococcus sp. 2319x1E is able to grow on different mono- or polysaccharides as carbon source, including xylan. To investigate xylan degradation in Thermococcus sp. 2319x1E, cells were grown on 4 different carbon sources for 12 h (mid-exponential phase) and harvested by centrifugation. Using a label-free quantification approach the whole proteomes were analyzed. In another experiment a glycosidase specific activity-based probe (JJB384) was used to isolate specific Thermococcus glycosidases activated during growth on xylan or xylose. |
HostingRepository | PRIDE |
AnnounceDate | 2022-02-17 |
AnnouncementXML | Submission_2022-02-17_03:40:42.488.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Farnusch Kaschani |
SpeciesList | scientific name: unclassified Thermococcus; NCBI TaxID: 2627626; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion Lumos; LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-05-17 08:19:12 | ID requested | |
⏵ 1 | 2022-02-17 03:40:43 | announced | |
Publication List
Klaus T, Ninck S, Albersmeier A, Busche T, Wibberg D, Jiang J, Elcheninov AG, Zayulina KS, Kaschani F, Br, ä, sen C, Overkleeft HS, Kalinowski J, Kublanov IV, Kaiser M, Siebers B, sp. Strain 2319x1E. Front Microbiol, 12():734039(2021) [pubmed] |
Keyword List
submitter keyword: Thermococcus sp 2319x1E, ABPP, fluorophosphonate, FP |
Contact List
Farnusch Kaschani |
contact affiliation | Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany |
contact email | farnusch.kaschani@uni-due.de |
lab head | |
Farnusch Kaschani |
contact affiliation | University Duisburg-Essen |
contact email | farnusch.kaschani@uni-due.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD026056 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD026056
- Label: PRIDE project
- Name: Investigation of xylan degradation in Thermococcus sp. 2319x1E