PXD026023

PXD026023 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Rosenthal_Zebrafish_TurboID_P88_SAINT5429_miniTurbo_transgenics_2021
Description	MassIVE title 4: Rosenthal_Zebrafish_TurboID_P88_SAINT5429_miniTurbo_transgenics_2021 SAINT Task ID 5429 This dataset consists of 9 raw MS files and associated peak lists and result files comprising of transgenics (heat-shock) analysis of the miniTurbo fused baits. This README file is associated with five separate MassIVE submissions. All samples were acquired on a Thermo Scientific Orbitrap Fusion mass spectrometer operated in Data Dependent Acquisition mode. All samples were prepared and analyzed by Shimon Rosenthal. The files are associated with a manuscript by Rosenthal et al. that establishes protocols for proximity-dependent biotinylation in zebrafish. Anne-Claude Gingras and Ian Scott are the corresponding authors of the manuscript (gingras@lunenfeld.ca; ian.scott@sickkids.ca); Anne-Claude Gingras should be contacted for questions on this dataset (gingras@lunenfeld.ca). Each MassIVE submission is associated with 5 Supplementary Files (in addition to this README file) Table 1 describes the composition of this dataset Table 2 lists all the peptide identification evidence (as per iProphet) Table 3 lists the SAINTexpress interactions Internal reference from the Gingras lab ProHits implementation: Project: P88 Export version: VS4 SAINT Task ID: as listed below
HostingRepository	MassIVE
AnnounceDate	2021-06-30
AnnouncementXML	Submission_2021-06-30_07:49:36.931.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Gingras Lab
SpeciesList	scientific name: Danio rerio; common name: zebrafish; NCBI TaxID: 7955;
ModificationList	deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-05-14 09:56:07	ID requested
⏵ 1	2021-06-30 07:49:37	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: BioID, Proximity-dependent biotinylation, zebrafish, in vivo biotinylation, protein-protein interactions, miniTurbo

submitter keyword: BioID, Proximity-dependent biotinylation, zebrafish, in vivo biotinylation, protein-protein interactions, miniTurbo

Contact List

Anne-Claude Gingras
contact affiliation	Lunenfeld-Tanenbaum Research Institute
contact email	gingras@lunenfeld.ca
lab head
Gingras Lab
contact affiliation	Samuel Lunenfeld Research Institute
contact email	gingras@mshri.on.ca
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000087430/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000087430/